RNA id: TU888026


Basic Information

Item Value
RNA id TU888026
length 1345
lncRNA type read_through
GC content 0.41
exon number 2
gene id LOC110531712
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20186727 ~ 20254184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTTGAAGCACCATCACTCAGAGTATACACCACCTCACCTAGTGGTTGAGAAAGAGACAGCGCCATAATAGACCAAACTTTTTCTCAGTAGAGCAACTATCAGCAAAGTCAGGGATAGTAATAAAAGACAAGTGAAAGTGTGCAAGAAAGGCAAGTAGCCTGCATGTTAAACTGTAAAAGAAatgtttaaaggtccaatgcagccatttttatctcaacatcaaatcatttctgggtaacaattaagtaccttactgtgattgttttcaattcaaatggtAAAAAGGTACAAAAATagattcttagcaaagagcaatttctcaggCAATGATTTTGTTAGCACTGTCTGGGTGTGGTTTAAGTGAGGAGGGGAAAACTGACAatttgctgttattggcagagaggtttggaactctctttctcaTTGGTCTACTAACTCATTTACAGCCTGGTGATGTCaacatggaaggccaaaactcctaCCAAAACAGGGGgacatttcaggcagtctttttaCACAGCTcgtacactaaaagggcattatcataattttcacaatttcacagtattattccaacctcatagtgtggaaatatatataaaacacagacaaatcacgtttttgactggaCTGGACCTTTAAAGCCTGAGATTAACATTCAATGGTTACTATGAGATGAGTAAATGGTATAAAATGTCTCTCCTACAGACACATCTGAAGTATTCAGTACATTCAACATATCTTTGCTATAAACTGGAATGGTATTCTATTTCGATATGGCCATCACTATTTGGCTATGCTAGAAATTATGAAATTGTGTAATTTTTCAACCACAAACCCAAACTGTAAGCCCGATCCTTAACCTTTACACAATATAAGGAACAAAAAGTTAGTAAAGCACTTGCTCAGCAGTTAAGACCCTTCTAGACTTTGCCATCTAGTCCCTACCCTCATTTTGGGGTCCTAAGCCATGCGAACCTGTTGGGTGACCACGTGAACCTGTTGGGGACCTGATGTGGTCTGAGTCTTAACCTCACGAGCCATCTGGCACCAGGTACAGACGTAGCAGCAACACACCAATGCGACGTCTCCACACGTCGAACcctgagagggggaagagggaaggaCAGATGGATAGAAAATGAAAGCAGAGGACAAGAACATGTCAACAGGACAGAGTTAAAAGGGGATGaggacagaggtggagagaagaaTAGCGGGTGTAGCACAAGttaaggggagaaggagagagaaaaggttgAGTTTAATTCCATATTCAGTGTTATATTTAAAGGGTAATCAAGGCAATAACAACACTAAGAACAACAGCATTGAGGGGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU888045 lncRNA upstream 2631 20207061 ~ 20207283 (+) True G779405
TU888044 lncRNA upstream 3074 20206626 ~ 20206840 (+) True G779404
TU887984 lncRNA upstream 65079 20138277 ~ 20144835 (+) True G779352
TU887983 lncRNA upstream 71797 20135564 ~ 20138117 (+) True G779351
TU887982 lncRNA upstream 75103 20134374 ~ 20134811 (+) True G779350
TU888093 lncRNA downstream 52638 20301755 ~ 20303563 (+) False G779446
TU888091 lncRNA downstream 52936 20302053 ~ 20303563 (+) False G779446
TU888092 lncRNA downstream 52936 20302053 ~ 20303563 (+) True G779446
TU888117 lncRNA downstream 75380 20324497 ~ 20325034 (+) True G779465
TU888123 lncRNA downstream 79131 20328248 ~ 20328472 (+) True G779469
LOC110532969 mRNA upstream 35964 20166595 ~ 20173950 (+) True LOC110532969
XM_021615037.2 mRNA upstream 127830 20079382 ~ 20082084 (+) False LOC110531706
XM_036987533.1 mRNA upstream 127830 20079413 ~ 20082084 (+) False LOC110531706
XM_036987531.1 mRNA upstream 189485 20009183 ~ 20020429 (+) False LOC110531703
XR_005053202.1 mRNA upstream 263392 19942675 ~ 19946522 (+) True LOC110533004
XM_021615047.2 mRNA downstream 30957 20280074 ~ 20282985 (+) True LOC110531716
XM_021615050.2 mRNA downstream 85386 20334503 ~ 20336164 (+) True si:ch73-335l21.4
XM_021615049.2 mRNA downstream 87304 20336421 ~ 20341732 (+) True LOC110531718
XM_036987550.1 mRNA downstream 169575 20418692 ~ 20454969 (+) False acap1
XM_021615056.2 mRNA downstream 183279 20432396 ~ 20454969 (+) False acap1
TU887946 other upstream 127860 20079436 ~ 20082054 (+) True LOC110531706
TU887922 other upstream 169631 20039611 ~ 20040283 (+) True G779291
TU887902 other upstream 186446 20009516 ~ 20023468 (+) False LOC110531703
TU887900 other upstream 187878 20009516 ~ 20022036 (+) False LOC110531703
TU887801 other upstream 317467 19876268 ~ 19892447 (+) True LOC110531697
TU888672 other downstream 852462 21101579 ~ 21102271 (+) True G779964
TU892294 other downstream 2794890 23044007 ~ 23047045 (+) False G783405
TU892315 other downstream 2856354 23105471 ~ 23108039 (+) True gba3
TU893055 other downstream 3516588 23765705 ~ 23779501 (+) True LOC110531760
TU893030 other downstream 3553469 23802586 ~ 23804137 (+) True LOC110531761

Expression Profile