RNA id: TU888027


Basic Information

Item Value
RNA id TU888027
length 1664
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id LOC110531712
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20186727 ~ 20254184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTTTGTAAAGGTAAGACGTGTAAATGCTTTATTTAAAAACACTTATTGAACAAGCAGGTGAAATCAAGGACAAAGCAACAGAGGAAACAGTGTTCcgctgtagctcagttggtagaggatGGCGCTACCAGGGTAACGGGTTCGTTTCCCGGGACCACTGGTACGTTATATTTATGCACgcatgtctgctaaatggcatacacTATCATTTATATATAACATTCAATTTTAAATGCTGTTGCCGTTTGAATCATGGTTcaagcattttacatttacaacaGTACATTTAGTCATTTAACACTTATCTAAAGTACTCATCTTTAGGTAGCGAGGTAAGACAACCAAATAGCCATAATAGACCAAACTTTTTCTCAGTAGAGCAACTATCAGCAAAGTCAGGGATAGTAATAAAAGACAAGTGAAAGTGTGCAAGAAAGGCAAGTAGCCTGCATGTTAAACTGTAAAAGAAatgtttaaaggtccaatgcagccatttttatctcaacatcaaatcatttctgggtaacaattaagtaccttactgtgattgttttcaattcaaatggtAAAAAGGTACAAAAATagattcttagcaaagagcaatttctcaggCAATGATTTTGTTAGCACTGTCTGGGTGTGGTTTAAGTGAGGAGGGGAAAACTGACAatttgctgttattggcagagaggtttggaactctctttctcaTTGGTCTACTAACTCATTTACAGCCTGGTGATGTCaacatggaaggccaaaactcctaCCAAAACAGGGGgacatttcaggcagtctttttaCACAGCTcgtacactaaaagggcattatcataattttcacaatttcacagtattattccaacctcatagtgtggaaatatatataaaacacagacaaatcacgtttttgactggaCTGGACCTTTAAAGCCTGAGATTAACATTCAATGGTTACTATGAGATGAGTAAATGGTATAAAATGTCTCTCCTACAGACACATCTGAAGTATTCAGTACATTCAACATATCTTTGCTATAAACTGGAATGGTATTCTATTTCGATATGGCCATCACTATTTGGCTATGCTAGAAATTATGAAATTGTGTAATTTTTCAACCACAAACCCAAACTGTAAGCCCGATCCTTAACCTTTACACAATATAAGGAACAAAAAGTTAGTAAAGCACTTGCTCAGCAGTTAAGACCCTTCTAGACTTTGCCATCTAGTCCCTACCCTCATTTTGGGGTCCTAAGCCATGCGAACCTGTTGGGTGACCACGTGAACCTGTTGGGGACCTGATGTGGTCTGAGTCTTAACCTCACGAGCCATCTGGCACATGGGTCCAGGAGGGGCATGCAGAGACACCAGCCGAAGTGGGAGGCCGTCTGACACTGAAAACAGGGGAAGCACCACAAGGCACAgcaacAGGTGCCCATGTCAGAGCAGCAGTCACACAGTCCTGTGCTCCATTCCCCCGACCTCTGGGTGGTTGTTACAGTGGTGATCTGCTGCTGGTGGACAGCCATGGCTTTCTATTCGTATTAACTATAAAGCCTGAGAAGAGAGAAGTTGCAACACAGGGATCAACGGTTGTCTGTTTCGGGATGTGGCGGCAGGCAGCCTAAAACACCTACAATGGAAGTTGGCCTCGGTGGAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU888048 lncRNA upstream 24159 20219043 ~ 20223327 (+) True G779407
TU888045 lncRNA upstream 40203 20207061 ~ 20207283 (+) True G779405
TU888044 lncRNA upstream 40646 20206626 ~ 20206840 (+) True G779404
TU887984 lncRNA upstream 102651 20138277 ~ 20144835 (+) True G779352
TU887983 lncRNA upstream 109369 20135564 ~ 20138117 (+) True G779351
TU888093 lncRNA downstream 47571 20301755 ~ 20303563 (+) False G779446
TU888091 lncRNA downstream 47869 20302053 ~ 20303563 (+) False G779446
TU888092 lncRNA downstream 47869 20302053 ~ 20303563 (+) True G779446
TU888117 lncRNA downstream 70313 20324497 ~ 20325034 (+) True G779465
TU888123 lncRNA downstream 74064 20328248 ~ 20328472 (+) True G779469
XM_036987541.1 mRNA upstream 314 20239757 ~ 20247172 (+) True LOC110532972
XM_036987537.1 mRNA upstream 36248 20186727 ~ 20211238 (+) False LOC110531712
XM_036987538.1 mRNA upstream 36248 20189830 ~ 20211238 (+) False LOC110531712
LOC110532969 mRNA upstream 73536 20166595 ~ 20173950 (+) True LOC110532969
XM_021615037.2 mRNA upstream 165402 20079382 ~ 20082084 (+) False LOC110531706
XM_021615047.2 mRNA downstream 25890 20280074 ~ 20282985 (+) True LOC110531716
XM_021615050.2 mRNA downstream 80319 20334503 ~ 20336164 (+) True si:ch73-335l21.4
XM_021615049.2 mRNA downstream 82237 20336421 ~ 20341732 (+) True LOC110531718
XM_036987550.1 mRNA downstream 164508 20418692 ~ 20454969 (+) False acap1
XM_021615056.2 mRNA downstream 178212 20432396 ~ 20454969 (+) False acap1
TU887946 other upstream 165432 20079436 ~ 20082054 (+) True LOC110531706
TU887922 other upstream 207203 20039611 ~ 20040283 (+) True G779291
TU887902 other upstream 224018 20009516 ~ 20023468 (+) False LOC110531703
TU887900 other upstream 225450 20009516 ~ 20022036 (+) False LOC110531703
TU887801 other upstream 355039 19876268 ~ 19892447 (+) True LOC110531697
TU888672 other downstream 847395 21101579 ~ 21102271 (+) True G779964
TU892294 other downstream 2789823 23044007 ~ 23047045 (+) False G783405
TU892315 other downstream 2851287 23105471 ~ 23108039 (+) True gba3
TU893055 other downstream 3511521 23765705 ~ 23779501 (+) True LOC110531760
TU893030 other downstream 3548402 23802586 ~ 23804137 (+) True LOC110531761

Expression Profile