RNA id: XM_036987554.1


Basic Information

Item Value
RNA id XM_036987554.1
length 3516
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC118936359
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20540916 ~ 20550011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatacaccccaatAGAAAATGAGTATGAAGACGAGAAGACATAAGGATTCTGGATTTTAAGAGAACCCTGACATGTCTGGCCCCACCTGGCTGCCGCCAAGGACTCTGAGTAGCCCAGAGAGAACTGTTCCTCAGATGTCCCACTCCGGGCCAGCCATGTACAGACAGCCGCCCATGAAGGTCTCCTCGGACCCCCGGCCCAAGTATGGGGTCTATGACCagaaaggaggtggaggaggactgGCCACTAGGTACATGGCTACTGGACCCACAGGTGGACCCATGCAGCACCAAGAGGACACAGGGTTTCACCCTAAATCTAACGACCACTACTACCAACCACCTCCCCACGGGCTCAAAGAAGACCGGTCCTGGAACCCTCACATGGACAGCTATGAGCTAATGCATCGTGGACCTGACAAGCCAAGTGGACACCACTCCAACCTCGATGCAGAGATTGACTCTCTCACCTGCATGCTGGCCGATCTGGACAGCCATCCACAGAACAGCACACAGCTGTACGATAACGTGCCTTACAACAAACACATCTCAGGGGACCGCTACAAACCCTCAACCCAGCCAGGAGCACTCTCTCAGGGCAGGCCGTCCATGGGTTACCCCCCCCAGTCCCAGTACCATCCAGCACCCCCTTACCCCAGTGATCCCCACCAGGTTCCCCAGTACTCCCCCCAGCCAGACTACACCTACGCCCAGGTGTCCAAACCCTACCCTCAGCCCGTCCCTGCCTCCTATACCACCTCTTCCACCCCTACTGGCCCGAGGTTCAGCGTCCAGGTCAAAACAGCCCAGCCTGTCACCTACTCCCAAACTGGTAGACAAGCCGAGCAGGCTTACACCCCTCCTCCGCCCCACCAGCACTCCTCGCGCCCCCCACCCCAAAACCAGACGGGCCCCCAGGGCTGGTACCCTCCCCATCCCGCATCCCAAGCCCAGGAGCTGCACTCTGATGGGGGTTACAAGGAGATCCCCGGGGGGTCTAGAGGGCGAGGGAACCAGGGCCCCACGCCCAAGAGAGGCCTGGAGAATCACCAACCAGGGTCAAGAGAGGCCCCAAGTCCTGCCTATCAGCCCAGCAAGGGGTCAGCAGCTCCGAGGCAAGAGGAGGAATTGGACCGGCTCACTAAGAAGTTGGTGTATGACATGAATCACCCACCTACAGAGGAATACTTTGGTCGCTGTGCGCGTTGCGGTGACAATGTGCTTGGTGACGGCAGTGGCTGTATCGCCATGGAGCAGGTGTTCCACGTGGAGTGTTTCACCTGCATCACCTGCCACGCCCGTCTCCGGGGGCAACCCTTCTACGCCCTGGACAAGAAGAGCTACTGCGAAAGCTGTTACATTAGTACCCTAGAGCGCTGCTCTAAGTGCTCCAAACCCATCTTGGACCGTATCCTGCGGGCCATGGGAAAGGCCTACCACCCGCGCTGCTTCAACTGTGTGGTGTGTGGCTGCTGCCTGGACGGGGTTCCCTTCACTGTGGACGCCACCTCCCAGATTCACTGCATAGATGACTTCCACAGGAAGTTTGCCCCCCGCTGCTCAGTGTGTGGCCAGGCCATCATGCCCGAACCGGGACAGGAGGAGACCGTCAGGATAGTGGCGCTGGACCGCAGCTTCCACGTCAACTGCTACGTGTGTGAGGAGTGTGGTCTGCTCCTGTCCTCCGAGGGTGAGGGGCGAGGCTGTTACCCTCTGGATGGTCACATCCTGTGTAAGGGCTGCAGCGCCCGCCGCATCCAGGACCTTTCCGCCAAAATCTCCACTGACTGCTAACCAACTAGGGGACGTCACCTCTGACCCCACAATCCTTCCATTACTTTCCCCTGCTCTGAGGTAGAAGTTGCCCTAACGAATATATCTGAGACCAGTTTCACCCCTCTCCAAATCATAACCTTAACCACAAGGGGGAAATGTTAAACTAAGGGCAACTTTGTCCTTCTCTACTTTTTCATACTCTTCTAGTCAATCTTCGTTCTTCAGATGCCCAAAGCTGTGGAATCAGTAGTACCACGTCACCTCAAACTGCCTATGACAGTCTTCAATATGATGCCATTATTTAATTTCACTTGACTAGGTTTATTGATACATAATTACAGGTTAAAGACAGGGTATTGTAACATGGATTGACAACAAGTTCCACCACTATTCCCTAATCCTTGTCCTCTGGTTTATACTAGCTATCACCTATCCTCTATATTGTATCCTGTACCCCTACTCCCTATCTACTacaccctatcccctaccctTCAGCGCATACCAGTATTGTATAGAGCCTCTGACCTGCAGGCAGCAGGGGCTGCActaacccccctcccccttccccaccCACTGCTTATGTCACACTAATCCTGCATGTCCTACACTATGTCTTACACTCTATCCTGCCAGACATAGAGGGGACATGGAAGGAGCTCTATAATGGCAAATAATGATTGATGGATATCGGATAGGAATATTAGGTGGTGATGATGATTGAGGAAGACTATATCTTTCTGCCATCTGACCAGTCCAGAtaatggaacatatatatattttgtatgcCACTAAAGTCAATAAAAAACGCTGAACTGCCTCGCATGAAAAAAACGCACATATGCAAATGATATGTGAGACAGAGCATATGTTGCGGGTTGATTTGGTTATGGAGTGAATGGGTTTGCATACGTTTCATAGGAGAAGAAGTAGCTGTAGTTGGATTGATTTGTGAATAGAATAGAGGACACAGAAAGATTAGGTAGTCATAAAAAGCAGATCGCTAAAGTCAATGCTGTGACCCTATTTAATGTTGAAACAGTCCGTTTGTGTCAAGATGATAACTTGGCAGCTGACATGTTTGCCTTGTCAAAACAGAACAGCGATTTGCATCATGATAATTGGTACTGCATTTCCGAGAATGTTACTTGTAAGCCAGCCAAAACTCCAAACCCCATCTTCAAAATTTGAATGCGCTTTTTATTACTATAATATCATTTCTCTTAACATTTGTGTTGATTTATACTTGACTGTTAcaatggtgaagaaggtgcaatgAAGTCTAATGCAATTGTCTTACTGAGAAACAGGGATCTCATCCTCTTGTGTTCTTTATGGGTTTTTGTTTTAGCTTAAGAGTTAGATTTGCGTCGCTAATCCATATCCTCATGGCACTAGCGGCCATGTTGAAGCATCTATGAGACATTGGAGTCCTTCTCACATTGTTTTGATGTCATTTGTCGTTGTGTTTCGCCGTCCCGCGGTCTTAATTTGTTTTGCAACGTAAAAGCGGCTCGTATGATTTTCATTTCACACGCCTTCAAAACCCaaatctgtgtttgtgtctggaaTCACAGTACTTGATCCTTTTCCCTCAGTATTTGTCTCTGCGCACAAAGATATGAAGATCTCTGTGTGAGCCCTGTGAGTTGCATTTTCCACTTTTGCGTATTTATTTCAACTCCTGTTATACACTCATTGTTTCTAAGTCTGTGTTTATGGTCGTCACTGCGTGTAAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU888278 lncRNA upstream 16916 20523635 ~ 20524000 (+) True G779599
TU888276 lncRNA upstream 18038 20522439 ~ 20522878 (+) True G779597
TU888275 lncRNA upstream 18496 20522124 ~ 20522420 (+) True G779596
TU888260 lncRNA upstream 30302 20508432 ~ 20510614 (+) False G779584
TU888373 lncRNA downstream 119383 20669394 ~ 20681070 (+) True G779689
TU888404 lncRNA downstream 171586 20721597 ~ 20722248 (+) True G779719
TU888410 lncRNA downstream 180074 20730085 ~ 20742513 (+) True G779724
TU888534 lncRNA downstream 321734 20871745 ~ 20871955 (+) True G779846
TU888537 lncRNA downstream 325013 20875024 ~ 20875470 (+) True G779849
XM_021615069.2 mRNA upstream 1357 20531945 ~ 20539559 (+) False trip6
XM_021615067.2 mRNA upstream 1357 20532107 ~ 20539559 (+) False trip6
XM_021615066.2 mRNA upstream 1357 20532205 ~ 20539559 (+) False trip6
XM_021615068.2 mRNA upstream 1357 20532205 ~ 20539559 (+) True trip6
XM_036987550.1 mRNA upstream 85947 20418692 ~ 20454969 (+) False acap1
XM_036987557.1 mRNA downstream 742690 21292701 ~ 21355731 (+) False LOC110531733
XM_036987558.1 mRNA downstream 742690 21292701 ~ 21355731 (+) False LOC110531733
XM_036987559.1 mRNA downstream 742690 21292701 ~ 21355731 (+) False LOC110531733
XM_036987560.1 mRNA downstream 742690 21292701 ~ 21355731 (+) False LOC110531733
XM_036987561.1 mRNA downstream 742690 21292701 ~ 21355731 (+) False LOC110531733
TU887946 other upstream 458862 20079436 ~ 20082054 (+) True LOC110531706
TU887922 other upstream 500633 20039611 ~ 20040283 (+) True G779291
TU887902 other upstream 517448 20009516 ~ 20023468 (+) False LOC110531703
TU887900 other upstream 518880 20009516 ~ 20022036 (+) False LOC110531703
TU887801 other upstream 648469 19876268 ~ 19892447 (+) True LOC110531697
TU888672 other downstream 551568 21101579 ~ 21102271 (+) True G779964
TU892294 other downstream 2493996 23044007 ~ 23047045 (+) False G783405
TU892315 other downstream 2555460 23105471 ~ 23108039 (+) True gba3
TU893055 other downstream 3215694 23765705 ~ 23779501 (+) True LOC110531760
TU893030 other downstream 3252575 23802586 ~ 23804137 (+) True LOC110531761

Expression Profile