RNA id: XM_021615125.2


Basic Information

Item Value
RNA id XM_021615125.2
length 7162
RNA type mRNA
GC content 0.49
exon number 39
gene id LOC110531736
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 21595032 ~ 22190303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAACAGCAGCAGCGCTGGCTTTCTAAAGAAAGCTTAGCTCTCACTTTTCTGTCTGTCTTATTACCGCTCTCATTGTCTCTTGCGACAGCGGGAACGGAGCAGCCACAtactctcctcctcaccatttATTCACTTGGGGCCTGTATTTGGAATAAGAAAGCATTGCTGTTTCTGACTGGAGAGAAGGAAGATAAAACTCATCTGGATTTCCTAAGGAATTTTATCTGGATGCTTTGTTACCGAGGCTTTTGAATTCATCAGCCGGGGTACATAATGTGACCATCCGTTCCACAATAGGGAAATTCCCGAGGAGTTCTGATTCTTTCATTCCTTCCGGTCCGAGGCGGCATTGCTATCAACTGTTCCAAACAGGTGGGGGCATTGGGGGTATTGGTCAGACAGGTGTTGTTGGTGAGAGCGAAGCTTGGGCATCAGGCAGAATGTTGGCATCTGCATGAGTGGAACAGAGGAGCCTCAGTTCTGGTTCTCTTTCCTGAGACGACAACCACAGGATGAGGCTTGAGAGGAGGTCTCAGGAGAGAGAATGTTCCATGACTTTCACACCTTCAACCTCAAGCTCTTGAATCATTGGGACAGTTGCTTGGGTGCTGAAAGGCTGTGAATATCCTGCATCTGAGAAGTCAGACCAGACTGACTCACAGAGCTCTGTGAGCCAGCACCACTGAGGCTGCCAAAGCATGCTGGTGCCAAGCTGTCCCATGATGCACATAGCTAGACCCGCACTGCTCGTCCTGGGTCTGCTCCTCCTTCTCGCCGACGCCGAAAcaccACCAAAGTTTTTGAGAACCCCCAATGACCAAACGGGCGTGCAAGGAGGCGTGGCATCATTCATCTGCCAAGCAACGGGAGACCCACGCCCCAAGATAGTTTGGAACAAGAAGGGGAAGAAAGTCAGCAACCAGAGATTTGAGGTGATTGATTTCGATGACGGCTCTGGCTCAGTGTTGAGAATTCAGCCCTTGCGTACGCCCCGAGACGAAGCCATATACGAGTGTGTTGCCTCCAACACTGTTGGAGAGCTGAGTGCTACTACGAGACTCACTGTTTTACGTGAGGACCAACTGCCCCCTGGTTTCCCCACCATTGACATGGGTCCCCAGTTGAAAGTGGTAGAGCGAACTCGTACGGCCACCATGCTCTGTGCCGCCAGCGGCAACCCTGACCCAGACATCTCCTGGTTCAAAGATTTCCTACCcgtcaacaccaccaacaacaatgGACGTATCAAGCAGCTCAGATCAGAATCCTTTGGTGGTACACCAATAAGAGGCGCCCTCCAGATTGAGCAGAGCGAAGAGTCCGACCAGGGGAAGTACGAGTGCGTCGCCACCAACAACGATGGAACCCGTTATTCTGCCCCCGCCAATCTATATGTCAGAGAGCTGCGAGAAGTGCGACGGGTGCCCCCACGGTTCTCCATCCCGCCTACGGACAATGAGATCATGCCTGGAGGCAGCGTCAACATCACCTGTGTGGCTGTGGGCTCCCCCATGCCCTACGTCAAATGGATGCTGGGAGCCGAAGACCTGACGCCCGAGGACGACATGCCCATAGGGCGAAACGTTTTGGAACTCACTGACGTCCGCCAGTCTAACAACTATACCTGCGTAGCCATGTCCACTCTCGGGGTTATTGAGGCGGTGGCGCAGATCACGGTGAAAGCATTGCCCAAGCCGCCCGGCATTCCCTTGGTGACGGAGCGCACGGCCACCAGCATCACGCTGACATGGGACTCAGGCAACCCTGAGCCAGTCTCCTACTACATCATCCAGCACAAGTCCAAGATCTCAGAGGACACATACAAGGAGATCGACGGCGTGGCCACCACTCGATACAGCGTGGGCGGCCTCAGTCCCTACTCGGACTACGAGTTCCGAGTGGTGGCGGTAAACAACATCGGGCGTGGGCCGCCCAGCGATGGCATCGAAGCCAAGACGGCCGAGCAGGCACCTAGCACGGCGCCCAGGCAGGTCAGGGGTCGTATGCTCAGTGCCACCACAGCCATCATCCACTGGGACGAACCAGAGGAGGCCAATGGGCAGATTATGGGCTACCGTGTGTACTACACCATGGACTCTGCCCAGCACGTCAACTTGTGGGAGAAGCAGATAGTGCGTGGGTCAAACTTCCTCACTATTCAAGGCCTCATCCCTAACAAGACCTATTACATTAAGGTCCTGGCCTACACGTCGGTGGGCGATGGACCTCTGTCTGCAGATCTCCAGATCATTGCCAAGACGGGGGTCCCCTCTCAACCGACCGACTTCAAAGGGGAAGCCAAATCCGAAACAAGTATACTACTATCGTGGATAGCCCCTGCACAGACCGGACAAGACAATCAAATCATGGGATATGAACTTCTGTACAAGAAGGGGGACGACAAGGAGGAGAAACGAATCAGCTTTGAACCAACCACCACATACCTGCTGAAGGACTTGAAACCCTTCACTACTTATACTTTCCAGCTAGCCGCGCGCAGTAAGCATGGTATCGGAGCCTACACCAACGAGATCTCTGCAGAAACCCCTCAAACACTGTTTGCAAAAAACTTTCATGTGAAAGCTGCCATGAAGACATCTGTGCTCCTCACCTGGGAGATCCCAGACAACTATAACGCAGCTCAGCCTTTTACAATCCTCTATGACAATGGCCAGAGCGTGGAGGTGGATGGCAAGCTCACTCAGAAGCTTATCACGGGTCTACAGGCTGGGACGCAGTACTCCTTCCTGCTGACCAACCGGGGCAACAGCGCCGGCGGTCTCCAGCACCGCGTCTCCACCATGACCGCCCCGGACATCCTGCGCACCAAGCCCTACCTGATTGGCAAGACCAACTTGGATGGCATGGTCTCTGTGGAGCTGCCCTCAGTCCAGACTTCAGAGAAAGTCAGGGGATACTACATAGTGGTGGTGCCTCTGAAGAAACAGCGCACAGGAAAATATCTCAAACCCTGGGACAGTCCAGATGAAATGAATCTAGAAGAGCTGCTCAAAGAGATTAACCGAACAAGCAGAGGCCTTCGCTTCCGGAGGCAAGCTGAGCCCAAAGCCTACATCGCTGCCTACTTCAAAGACCTTCCTACCGAGTTCACTCTGGGAGACACCAAGATCTATGGGGACTTTGAAAACAAGCAGCTCGCCAACGGCCAAGAGTACATCTTCTTTGTGCTTGCTGTCCTCGAGATCTCTGAAAATaCCATGTATGCCACCAGCCCCTACTCCGACCCTGTCGTGTCAGCTGACCTTGACCCCCAGCCAATCATTGACGAGGAGGAGGGACTTATCTGGGTGGTGGGCCCAGTGCTCGCTGTGGTCTTCATCATCTGCATCGTCATCGCCATCCTCCTGTACAAGAGGAAAAGGGCAGAATCCGAAGCTAGAAAAGGAAGTCTGCCCAACAGCAAGGAGATTCCGTCTCATAACCCCACCGACCCTGTGGAGCTTCGACGCATGAACTTCCAAACGCCTGGCATGGCCAGCCACCCACCGATCCCCATCCTGGACCTAGCTGATCATCTGGAGCGTTTGAAAGCCAACGACAACCTAAAGTTTTCGCAGGAATACGAGTCCATCGATCCCGGGCAGCAGTTCACGTGGGAACACTCCAACCTGGAAGTCAACAAACCAAAGAACAGATATGCTAACGTGATAGCATACGACCACTCCAGAGTCCTGCTATCGGCTATTGACGGTATCCCTGGAAGTGATTACATCAATTCCAACTACATCGACGGCTATAGGAAGCAGAATGCATACATCGCCACGCAGGGCTCGCTGCCAGAGACGTTTGGTGACTTCTGGAGGATGATCTGGGAACAGCGGAGTGCCAACATCGTCATGATGACCAAGCTGGAGGAGAGGTCCAGGGTGAAATGTGACCAGTACTGGCCCACTAGAGGGACGGAGACCTACGGCCTCATCCAGGTGACGCTGTTGGACACGGTTGAGCTGGCCACATACTGTGTCAGGACATTTGCACTTTATAAAAATGGTTccagtgagaagagagaggtgaggcAGTTCCAGTTCACTGCCTGGCCTGACCACGGTGTACCCGAGCACCCCACTCCATTCTTGGCCTTCCTCAGACGGGTCAAAGCCTGTAACCCCCCAGATGCAGGGCCCATGGTGGTACACTGCAGtGCCGGGGTCGGGCGCACGGGCTGCTTCATCGTAATCGACGCCATGATGGAGCGCATCAAGCATGAGAAGACGGTGGACATCTACGGCCACGTGACGCTGATGCGCGCCCAGCGGAACTACATGGTGCAGACGGAGGACCAGTACGTGTTCATCCACGACGCGCTTCAGGAGGCCGTCACCTGCGGCACCACCGAAGTGCCTGCCCGAAACCTCTACGCCTACATCCAGAAGCTGACCGGGATCGAGGGTGGAGAGAACGTCTCAGGCATGGAGCTGGAGTTCAAGCGTTTAGCCAACACTAAAGCCCATACGTCGCGATTCATCAGTGCCAATCTCCCCTGCAACAAGTTCAAGAACCGCCTTGTGAACATAATGCCATACGAGTCCACACGAGTGTGTCTTCAGCCAATCCGAGGGGTGGAGGGCTCCGACTACATCAATGCCAGTTTCATTGATGGATACAGGCAACAGAAAGCCTATATTGCCACACAAGGTCCTCTAGCAGAGACCACGGAGGACTTCTGGAGGATGCTCTGGGAACACAACTCCACAATCGTGGTCATGCTAACGAAGCTCAGAGAAATGGGCAGGGAAAAATGCCACCAGTATTGGCCAGCAGAGAGGTCGGCCAGATACCAGTACTTTGTGGTGGACCCCATGGCTGAGTACAACATGCCCCAGTACATCCTGAGAGAGTTCAAAGTGACTGACGCCAGGGACGGACAGTCTCGGACGGTCAGGCAGTTTCAGTTTACAGACTGGCCCGAGCAAGGAGTGCCAAAATCGGGAGAGGGCTTCATCGATTTTATCGGCCAAGTGCATAAAACAAAAGAACAGTTTGGTCAAGATGGGCCTATCTCAGTCCATTGTAGTGCGGGCGTGGGTAGGACCGGAGTCTTCATCACCCTCAGCATCGTATTAGAGCGGATGAGGTACGAGGGCGTGGTGGATATTTTCCAGACGGTGAAAATGCTCCGGACACAGAGACCGGCCATGGTGCAGACAGAGgATCAATACCAGTTCTGTTACAGAGCTGGCTTGGAATACCTTGGGAGCTTTGACCACTATGCTACGTAAGAGTCCCTGTCCCGGAGGAAAAGCAGAAGGCCCTTGGACAACCCCAGCGAGCCTCTCTTCTGAGCCATAATTTCCTGTTTGAGAAAGTACTTCTTAACTCCTAGCTAAAGACTCAATTAAGTGTTGGATGTGAGacacaaaaatgtcaaaaaatgtATAAAGATGATTCCTGGAGGACCAAGTGTTTCCCAAAACCCATGGAACTCACCCTGgcgtgggaaagagagagggaatccTGACTGTTGAAGCATCttatggaatattttttattcttctGTTGCTTCAAGGATTCGTCTTGGGTTCAAATAACTGaaagaaacataaacaaaaaaataacagaaGGTACTATTACATCGACAAGTAATGCATCATATTACAAACCATAGGAGAGGCAAATGGAGGCACAGAGAATGGCTTAAAACTCAATGCACATTGTAAAGAGACATTTCTGTTCCACAATCAAACTACGCAGAGACAACTACCCATCAAAAAAGAAGACACCAGTGCTTGGTCCAATATGAAAAACAGGACACAGCTAAAGTAATAATTAATAATATACCCAGTTTCCTGTCACAACATTCATCATTTAAACAATTGGGGGGTAGTGGGAATGTTTAAAGATATATGAAACAAATAAAAACCTATTGATTTCATTTTTTACTATACAGCTGAGATGTGCTTAATTTTGAACCATGTGAAATTTGATTTcctttttttaacaaaacaatcACTCGACAAAGTGAATCAAACAAAGTACTTGCGTAATCGTTCATTTTTTTCCTTACGAGTTGTATTTTTGAAAGCTGTAGAACTTTTCTAATGTATGCACCATCATGCAGAGAAAGTCTTCGCTCTTTCCGGTTTTCTTGCAAATTTTTCTTTATGATTGTTTCTCGCACTTTGTGCAGTCCTGTATTCACACTACCAAATGTTGACTTTGTTACAGGGTTTTTAGTTTCGTTTTTTAGTTTTGTCTTATTTGTCCATGATCACATACACAATAACCTACTTACACCCATGTAATAAACTGGGGCTTTGTGGAATCAACAGGGATGAGCAAAGTATGAAGTTGCTGCTACCGATTATCTTAGTTCTTCCATGTTAGAATGATGGTAAAAGATGAGCACCTGATGGATAAAATACATGAAATGATATATACATATTTATGTTATATAAGATGAcagatatatacattatatatgatTAATACATTTGCATAACCTATAACATATGTATATTGAAATAAAGTATATCATTTATGGCTATATATGAAAGGAAAGGATTGTATATGAAAGCTTATACAATGAGATTTCTATACTTTGGGGGAAATTAAGATATTTTTCACTGGAATGCACATCAGTAGGACAAAAACGCATTCTGATTCAGTGCATATTTTCTTGTGCAATAAATAGGTGTATTATAGATAGGGTTCATGTGGATACTTTGTTAGACATCATGACAATGTTGTTCCCGTGGTGAGGCTTGTTGGGAACGTCACGTATCACCAGTGTATATAGATACGCTCAGACAGTCTGTAGTTCCATAGCAGAGCAGGGGGTCCCTTAGACTAAGTCATTGCTCCATACAATAGGGCAAGGTACATAGATGTAACTTTCATCTTGAGGTTTTCAAACGCTCAATGGCATAACATGTTTTCATTTAGCATTTAGAGTGCCTTATATTTATACCTGTTTTTTATAACGTTCATTTAACACATTATTGTATTCTTTGAGAAGTCCGTGCATATAGAACATATAACAAACTGTATATTACATTTTTACCTTAAGTATTCATTTGTCACATAATATGAAATTATATATGCAAATACGTACATGGCAAGGCCCTATTTTCATTTTCTGTTGCCTTAATGTGGCTtagtaaaaataataaaacatcgAAGACTCCCATGTCGTTCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU890280 lncRNA upstream 9942 21584895 ~ 21585140 (+) True G781447
TU890271 lncRNA upstream 21075 21573635 ~ 21574007 (+) True G781438
TU890211 lncRNA upstream 43580 21551302 ~ 21551502 (+) True G781402
TU890002 lncRNA upstream 163828 21430383 ~ 21431254 (+) True LOC118966017
TU889985 lncRNA upstream 190705 21404095 ~ 21404377 (+) True G781180
TU891193 lncRNA downstream 67930 22258233 ~ 22258500 (+) True G782337
TU891197 lncRNA downstream 70874 22261177 ~ 22261614 (+) True G782341
TU891200 lncRNA downstream 71936 22262239 ~ 22262439 (+) True G782344
TU891218 lncRNA downstream 80168 22270471 ~ 22270715 (+) True G782362
TU891287 lncRNA downstream 130839 22321142 ~ 22321405 (+) True G782430
XR_005053206.1 mRNA upstream 163768 21430367 ~ 21431314 (+) False LOC118966017
XM_036987561.1 mRNA upstream 239351 21292701 ~ 21355731 (+) False LOC110531733
XR_005053443.1 mRNA downstream 476073 22666376 ~ 22667896 (+) False LOC118966179
XR_005053444.1 mRNA downstream 476073 22666376 ~ 22667896 (+) True LOC118966179
XM_021615139.2 mRNA downstream 537796 22728099 ~ 22756998 (+) True sec24d
XM_021615146.2 mRNA downstream 820382 23010685 ~ 23011526 (+) True LOC110531753
XM_021615149.2 mRNA downstream 914870 23105173 ~ 23111380 (+) False gba3
TU888672 other upstream 492811 21101579 ~ 21102271 (+) True G779964
TU887946 other upstream 1513028 20079436 ~ 20082054 (+) True LOC110531706
TU887922 other upstream 1554799 20039611 ~ 20040283 (+) True G779291
TU887902 other upstream 1571614 20009516 ~ 20023468 (+) False LOC110531703
TU887900 other upstream 1573046 20009516 ~ 20022036 (+) False LOC110531703
TU892294 other downstream 853704 23044007 ~ 23047045 (+) False G783405
TU892315 other downstream 915168 23105471 ~ 23108039 (+) True gba3
TU893055 other downstream 1575402 23765705 ~ 23779501 (+) True LOC110531760
TU893030 other downstream 1612283 23802586 ~ 23804137 (+) True LOC110531761
TU893032 other downstream 1643861 23834164 ~ 23839114 (+) True LOC110531763

Expression Profile