RNA id: XR_005053444.1



Basic Information


Item Value
RNA id XR_005053444.1
length 886
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC118966179
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 22666376 ~ 22667896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCAAACCTTATTTCTACCTTATCTACTCCAGAAGCAATGGGTGTGCCTGAGTCttatcacctctcaactagTTGAAGTTTAATTTGTTGACTGATGCCAAGGCAGCGGCTGCTTAGAAGGGGGCAGCTGCAGACCAGAAGACTGCAGCCAAGGCAGCCGCGGTCCACACCTGCCCTGTCTGTCGGACGCAAACCCAAAAACATTCAAGCAGCATTTTGAAAGCAAGCATCCCAAGTCTCCAATGGTCCCAGTACTGGTTGATGTGCAGGCCTAAGTGACCAAACAAACTCAAATGGACCTACAGCTGGGTTGTGATTCACAGACACACGATGACCACGATTTTAATGCTGCAACTGATAGGGAAAGAATGCAGGAACACACGCTGAGACCCCGAGTATGACTGGACATGGAATTGATATTTgagacaataacctaaaagggGTGCAGAAGTACACCAGCACACCATTTTATGTTTAATCCATGGCCAACCATCCCTCTAGCTACTACTTATTCCACACTATATTTTATGCCCCATGGTCCCTCAACTTTGGACATTTTGGAACCTACACTTATTTTCCCTATGCTGCTTCCTTCACTTGTTCTTCTCCTGATTTGATCACTTCTAGACAGAGTAAAACATTTCAAAGTATTGTGGTCTACTGTTTTTGCCACCTTTTtatcacctgtgtaatgatgtccTCCTGCTGCATATTCTGGGGGTTCAGTTCAGACTGAATGCAGTGTTAAATGTGCTGCTCACAATTGACAGCAGCAACATGGGATATTTGAATTGACAAGAAGgatgttgatatacagtgccttgagaaagtaattacaccccttgaccttttccatatgttgtgttacagcctgaattaaaatggat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU891578 lncRNA upstream 78068 22584227 ~ 22588308 (+) True G782716
TU891531 lncRNA upstream 141167 22524455 ~ 22525209 (+) True G782672
TU891525 lncRNA upstream 152193 22513887 ~ 22514183 (+) True G782666
TU891524 lncRNA upstream 154758 22511326 ~ 22511618 (+) True G782665
TU891439 lncRNA upstream 234135 22432026 ~ 22432241 (+) True G782580
TU891656 lncRNA downstream 28873 22696769 ~ 22697184 (+) True G782791
TU891666 lncRNA downstream 45517 22713413 ~ 22713922 (+) True G782801
TU891686 lncRNA downstream 93968 22761864 ~ 22762522 (+) True G782820
TU891687 lncRNA downstream 94660 22762556 ~ 22762910 (+) True G782821
TU891690 lncRNA downstream 98357 22766253 ~ 22766486 (+) True G782824
XM_021615124.2 mRNA upstream 476073 21595082 ~ 22190303 (+) False LOC110531736
XM_021615139.2 mRNA downstream 60203 22728099 ~ 22756998 (+) True sec24d
XM_021615146.2 mRNA downstream 342789 23010685 ~ 23011526 (+) True LOC110531753
XM_021615149.2 mRNA downstream 437277 23105173 ~ 23111380 (+) False gba3
XM_036987597.1 mRNA downstream 437307 23105203 ~ 23111380 (+) False gba3
XM_021615148.2 mRNA downstream 437312 23105208 ~ 23111380 (+) False gba3
TU888672 other upstream 1564105 21101579 ~ 21102271 (+) True G779964
TU887946 other upstream 2584322 20079436 ~ 20082054 (+) True LOC110531706
TU887922 other upstream 2626093 20039611 ~ 20040283 (+) True G779291
TU887902 other upstream 2642908 20009516 ~ 20023468 (+) False LOC110531703
TU887900 other upstream 2644340 20009516 ~ 20022036 (+) False LOC110531703
TU892294 other downstream 376111 23044007 ~ 23047045 (+) False G783405
TU892315 other downstream 437575 23105471 ~ 23108039 (+) True gba3
TU893055 other downstream 1097809 23765705 ~ 23779501 (+) True LOC110531760
TU893030 other downstream 1134690 23802586 ~ 23804137 (+) True LOC110531761
TU893032 other downstream 1166268 23834164 ~ 23839114 (+) True LOC110531763

Expression Profile