RNA id: XM_021615139.2


Basic Information

Item Value
RNA id XM_021615139.2
length 4521
RNA type mRNA
GC content 0.53
exon number 23
gene id sec24d
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 22728099 ~ 22756998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGGTTTCCCACAGGTTGGTGCATGCGCATTTACCACTGGGAATTACAGCGAGTTACGTACGGACCGGTGCTGTGTTGGAGTTTGACGTGGCACTCTACTTTGACTATCAGGAATTCGTAGAGAAGAGGACTCGGCAGGTACTCCCCAGAATACAGATCGTTGGATCTCTGCCATTTTGTAATGAGAAGACCTTAACAGCACAGGATGAGTCAGCAGGGTTATGTTGCCACACCTCCCTATTCCCAGGCCCAGCCTGGGATGGGGGGATACCCAGCCGGGTTTGGGAGCGCGCCTGCCCAGCCCCTCTATAGACACTATGGGGGACCACCTCAATCATTCCCCGCCCCACCAACAGGTATGATGAAGCCTGTGTCGTCCCCTTCCGGCATGCCTCCACCACAGGTCCCCAGCCATTACGGCTCAAACGGCCAGCAGAACGGAGCTCACCCTCAAAGCTACCCTGCCCCTCCGTATGGACAGCCACTTCAGTCCCCCTATCACAGCATGGCCCACCAGGGCCCGCCCCCAGCACAGCAGCTCACCAATCAGATGGGTGCCATGAACCTCGGATATGGTCCAGGGCCCGTGCAGAGCCCTCAAGCACCTCCCACCTCTCACCTAACCCAGCAGCAATTCCAGACTGCCCCTCCCACAGCCATGGGACATCCACCCATGGGCCCCCACTCGTCTCAGATGGCTCACCCACAATCACCCCTAGCTGGTCCAACTATGGCAGGGCCCCAATCTATGGGTGGCCCCCCACCCATGGGAGGCATGGGTAGGCCCTTCCCTGGcccaccccctccaggtgctgGGGGCTTCCAGCAGCCTGGGCCTGGAGCTGCTGGACCACCAGGACATCCTCAGCAACTACAAGGTCAATTTGGGGGGCAGATGGCGGGACCCGGGATGGCGGGACCCGGGATGGCGGGACCCGGGATGGCGGGACCCGGGATGGCGGGACCCTTCCAAGGTGGGGCAGCCCAAATGGCCGGCCCACCTCAGAAAAAGCTGGatcctgactccatccctagcacAACACAAGTCATCGAGGACGACCAAGCCAAACGAGGGGGACAGGTGTACACTACGAACCTCAGGGGCCAGGTGCCCCCGCTGGTCACCACTGACTATACAGTACAGGACCAAGGAAACGCCAGCCCAAGGTTCATGCGTTGCACCACCTACTCTTTCCCCTGCACGGCTGACCTGGCTAAGCAGTGCCAAGTTCCCCTGGCCACCATCATCAAACCCTTCGCCACAGTGCCAAAGAATGAGACTCCTATGTACGTCGTGAACCATGGTGAGACTGGCCCAATCCGCTGTAACCGCTGCAAGGCCTACATGTGTCCCTACATGCAGTTCACGGACGGTGGCCGCCGCTACCAGTGTGGCTTCTGCAACTGCGTCAACGAAGTGCCAGCCTTTTATTTCCAACACCTGGACCACATGGGCAAAAGGGTGGACTTCTACGAGAGGCCAGAGCTGTCGCTGGGGTCCTACGAGTTCGCCGCCACCCTGGATTATTGCAAGAACAACAAGCCAGCCAGTCCTCCAGCGTACATCTTCATGATTGACGTGTCCTATGCCAACATCAAGAGCGGACTGGTCAGACTGGTGTGTGATGAGCTGAAGACCCTGCTAGACAACCTGcccagAGAGGATGGTGCTGAGAGCTCGATGGTGAAGGTGGGCTTCGTCACCTACAACAAGATCCTACATTTCTACAACGTGAAGAGTGCCCTGGCCCAGCCCCAGATGATGGTAGTATCCGACACGGCAGAGATGTTCGTCCCGCTGCTCGACGGCTTCCTTGTCAACTTCCAGGAGTCGCGGGCAGTCATCAACAATCTCCTGGACCAGATCCCTGACATGTTTGCCGACACCAATGAGAGCGAGACGGTCTTTGCCCCCGTCATCCAGGCTGGGGTAGAGGCACTGAAGGCAGCAGAATGCAGCGGCAAGCTGTTCatcttccactcctccatccccACCGCCGAGGCCCCTGGGAAACTGAAGAACAGGGACGACAAGAAGTTGATAAACACAGAGAAGGAAAAGACTCTGTTCCAGCCCCAGAAGGCTGTCTATGAGCAGCTGTCCAAGGACTGTGTGTCTCAGGGCTGCAGCGTggacctcttcctcttccccagCCAGTACGTGGACATCGCCACCATGGGAGACGTTGCCACACACACAGGAGGCTCCGTCTTCAAGTACAGCAACTTCCAGgtggagagggatggacagCATTTCCTGAGTGACCTGAGGAAGGATGTGGAGAAGGCCATCGGGTTTGATGCCATCATGAGAGTCCGCACCAGCACAGGCTTCAGGGCTACAGACTTCTTTGGTGCCATCCACATGAACAACACCACAGACGTGGAGATGGCTGCCGTGGACTGTGACAAGGCTGTGACGGTGGAGTTCAAACATGATGACACACTTAGCGAGGAGACGGGCGCTCTCATGCAGTGTGCATTGCTGTACACGACCATCAGCGGCCAGCGGCGTCTGCGGATCCACAACCTCAGTCTGAACTGCAGCGCCCAGCTCTCTGAGCTCTACAAGAGCTGTGAGACGGACGCCCTTGTCAACTTCTTCGCCAAGTCAGcaTACCGTGCCATGCTGAACCAGCCCCTGAAGACGGTGAAGGAGATCCTGGTCAACCAGGCGGCCCACATGCTGGCCTGCTACAGGAAAAACTGTGCCAGTCCCTCCGCTGCCAGCCAGCTGATCCTGCCTGATGCCATGAAGGTGTTCCCAGTCTACTTAAACAGCCTGTTGAAGACTGGTCCCCTGGTGGGCAGCGCTGAGCTCTCTACAGATGACAGGGCTCACCAGAGACTCAGCACCACAGCCATGGGGGTGGAGGATACCCAGCTGCTGCTCTATCCACGCCTTATCCCACTGCACAACATGGACGTTGCCAGTGACGTGGTGCCAACTCCGGTGCGCTGCTCTGAAGAGCGCCTGACAGATGCCGGCATGTTCCTGCTGGAGAATGGGTGCTCCCTCTTCCTGTGGCTGGGCCAGGCCTGCCCCCCAGAGATGATCCAGAGCATCTTCAATGTGCCCTCCCTCGCCCATGTGCCCGTTGACCTGAGGTCCCTACCAGAGCTGGATAACCCCCAGTCTCAGAAGCTGCGCTCCATCATTGACTCCTTGCTTGACCAGAGGCCCAGCTCCATGAAGCTCATGATTGTGAAGCAGAAGGACCGGTCTGAGATTATGTTCCGCCAGCACCTGGTAGAGGACAAGGGGCTCCACGGTGGAGCCTCCTACATGGACTTCCTGTGCTATGTCCACCGCGAGATCAGACAAGTCCTCACTTAACACCACCCACAGTGGATATCACCTAGCTGGGCTGGGCTAGGACCAAAACAACCAGAGGACGACTCCAGAGCTGCCTTTCCAACACCCCTTTATTCCACACAAACCTATGGGGCTACCGCTCGCTCTTTGTCAGTATACCAGGATCTGTGCTCCAGTCTGCATTGTACATTTTCGTGTACTTGTACGTGTCAGTCTGACTGCTTTGTCTGTATGTACATTAACAATTTAACTGATTTCTATGTAAATGGGCCAATGATGGTAAAATTAATTTTGTGGGGTTCAGAACATCAGGACCACAGGGTTGGCTACATTTTGAAATGGACCATGTTTCACTATTGACCAAACCAAATTtaaattattttgtgtttttctggTGCGATTTAAATTGCCAACATCTGTTTTAAGCACATGCATTCTTTCCAAAATTGTAGGTTTGTCACAATTTCTCATTATTAAGGAATAGTTTTGACAATGTCACAGCACCAAATGGTAATTTAGCTACATGGACTGGAATAAACATCTGGTTGTAATGACTGAACACTGGTGCCGTGGCTATTAAATTAATGATTCACTCCACCATTTGTGATTGGATCCATTATTTTTGCCATTCCCCTCAGGAATGGAGAGGATGTGCTAGCAAGATAATTCATACAAGGCTGATTCCAGTGACAACTCACTGCTGTAAAAAAAGGGAGAAATAACCAAAATCAATTTATCCGTAAAGATGCAATTAAACATTCCACACTTAATTCATTCCAGTTATAGAACTATATGCCGTTTTGTTTTTATCAAGTTATTGCCGTTATTCATTTTAATATTATGTCAAGAATTGTGCTCTGCAAACCAATGGTTGTGTTAGTATGCGACGTGGAGGTTTTGGGGGAACTGTTCCTTTGCCAGTTAACCGTCTGCCttaattaaattgtttttatGGTAGTAAATACTAGAGGCCATTATTCTATTCCAGTGTGATATAGATTGCATACAAACCAAATAGATTGAAAACATCTCAGGTAATTTGTGTACCTAACAATTGTGGTGGAGCGCTGGAAAACAGGGGCGTTACTGTTTTAACTGGAAAGACGGAAGTGTGGCTAGAATGGATGTGTTCGAGGGATGTGCCATGTACATTTTGATCTAAAAAATCTCTTGTTTTTGATTAAATTCCTGACTATATCAAGA

Function

GO: NA

KEGG:

id description
K14007 SEC24; protein transport protein SEC24

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU891666 lncRNA upstream 14177 22713413 ~ 22713922 (+) True G782801
TU891656 lncRNA upstream 30915 22696769 ~ 22697184 (+) True G782791
TU891578 lncRNA upstream 139791 22584227 ~ 22588308 (+) True G782716
TU891531 lncRNA upstream 202890 22524455 ~ 22525209 (+) True G782672
TU891525 lncRNA upstream 213916 22513887 ~ 22514183 (+) True G782666
TU891686 lncRNA downstream 4866 22761864 ~ 22762522 (+) True G782820
TU891687 lncRNA downstream 5558 22762556 ~ 22762910 (+) True G782821
TU891690 lncRNA downstream 9255 22766253 ~ 22766486 (+) True G782824
TU891691 lncRNA downstream 10207 22767205 ~ 22767404 (+) True G782825
TU891737 lncRNA downstream 66070 22823068 ~ 22848193 (+) True G782868
XR_005053443.1 mRNA upstream 60203 22666376 ~ 22667896 (+) False LOC118966179
XR_005053444.1 mRNA upstream 60203 22666376 ~ 22667896 (+) True LOC118966179
XM_021615124.2 mRNA upstream 537796 21595082 ~ 22190303 (+) False LOC110531736
XM_021615146.2 mRNA downstream 253687 23010685 ~ 23011526 (+) True LOC110531753
XM_021615149.2 mRNA downstream 348175 23105173 ~ 23111380 (+) False gba3
XM_036987597.1 mRNA downstream 348205 23105203 ~ 23111380 (+) False gba3
XM_021615148.2 mRNA downstream 348210 23105208 ~ 23111380 (+) False gba3
XM_021615158.2 mRNA downstream 979301 23736299 ~ 23749171 (+) True LOC110531759
TU888672 other upstream 1625828 21101579 ~ 21102271 (+) True G779964
TU887946 other upstream 2646045 20079436 ~ 20082054 (+) True LOC110531706
TU887922 other upstream 2687816 20039611 ~ 20040283 (+) True G779291
TU887902 other upstream 2704631 20009516 ~ 20023468 (+) False LOC110531703
TU887900 other upstream 2706063 20009516 ~ 20022036 (+) False LOC110531703
TU892294 other downstream 287009 23044007 ~ 23047045 (+) False G783405
TU892315 other downstream 348473 23105471 ~ 23108039 (+) True gba3
TU893055 other downstream 1008707 23765705 ~ 23779501 (+) True LOC110531760
TU893030 other downstream 1045588 23802586 ~ 23804137 (+) True LOC110531761
TU893032 other downstream 1077166 23834164 ~ 23839114 (+) True LOC110531763

Expression Profile