RNA id: XM_021615159.2


Basic Information

Item Value
RNA id XM_021615159.2
length 2274
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110531760
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23765275 ~ 23780276 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGTGACTTCTTCGTAGCCGGTTAGGATAAtttacgtagcaggttaggaggcCAAGGTTGAGGCTAGGAAAGGGTTAGGGAAAATCACTTCCGGTCGTAGCTGTATGCAGTGGCGTGAAACGTGTCCCTTCTTCAAATACAACAACAAGCTAGTAAGTCACTTCGGTAGGTTGCTAGCCAACATCGACGAACCTTTGAAGGTCTATACGTTTTCGGTGTAACGTTACTTTTATAGCCACGGTGTTTGTTTTAAACACATTTCTGTTGTATATCTAGTTACCCTCTTAATTGCACATATACGTTGCTAGTAAGTTAGCTGGATAACATAGCACCAGGCTAGTCGCCCAtgctaacatccccgaccatgagttcactaaaCTACTCCTCCCCTGATAAAGAAGAGGGGGTCTGCTTGACGGAGAAAGACGGTATTTGGTTGAACATTGTCGTAAAAGATGAGAAACAAGAGGAGGATGTCACAGTAAAAAAAGAAGAGGGTGAAGCTGTTACAGTGAAACAAGAGGAAGAaacgttcagagtgaaagaggaggatgttaccgtgaaagaagaggaggatgttaccgtgaaagaagaggaggaagagaaagaggatgcAGTTTTTGGAGTGAAGACGGAGGGAGAGATAACTGTCACTTCGGAAGAGACAGGAGATCGGATTAACACCAGAGAGAGGCCAGACTGTCACTCTGACAGCGAAAAGAGTCCTTCGGGGGAACCAGACCCAGAGACGTCCAAATCAGCAGGAAggcaccactgctcccagtgtggaaagagttttactctGCTATGGAACCTGAAAATACACAAGAGAATACACTCCGGAGAGAAGccataccactgctcccaatgtggaatgACTTTTACCTGGTTAGGTAGTCTGAAAACGCACAAGAGggcacacacaggagaaaaacctttccaatgttcccactgtggaaagagttttacccagttAGGGGACCTGAATAGGCACGAGAGGACGCATGGAGAAGAGAAGCCCtaccaatgctcccagtgtggaaaaagTTTTAGGTGGTTAGTGAGCCTGAAaacacatgagagaatacacacaggagaaaagccttaccactgttcccactgtggaaagagttttagggGGTCAGTGAGCCTGAAacagcatgagagaatacacacaggagagaagccttaccactgttccCACTGTGAGAAGAGTTTTAGGTGGTTAGGTACCTTGAAATTGCATGAGAGGAcccacacaggagaaaagccataCCAATGCTCcttgtgtggaaagagttttaccaagTTATGGGGCCTGAGTAGGCATAAGAGGACACATACAGGGGGGGATAGCACCTACCACTGCTCCTTGTGTGGAAAGAGATTTACCCAGTTAGTGGCCTTGAAAGAGcatgaaataatacatacaaatacacaggAGGGGAATACATACCACTGTTCTCATTGTGGAAAgacattttcccagtcagaggccctgaaatcacatgagagaatagagaggTTGTGTTCTGACTTATGTTTTTGACTGTGGTATTTTTTTTATGCCACATGAAATAGTCATTACCTGGGTTGTTGTTTTTTCCATCTTGAGACGTGATCATGTCTAAAAATCTGATTTAAATATTTTAATGTGTATTTTGTTTTGATTGATTGGATACAAGTATAAACCCTGCAATGCGGTTCATTATGTTATTTGGATATTgcaaaatgtgaattattatataAGTAAGTATCCTTGCACGAGCCTAGGCTTCTCTGAGCCAGAACGGCTCATAGGAGCAAGAGCCTTTCTCCtatttctgtagtgtgaggcaccTTGATGCAGTCTATTTAATGATTATATAGATTAATGGATTTTTGTATTTCTTGATTCTAACCTCTTGAATTTGAAATATGATTTAGATTTTGCTAAGTTAATTTGATTGGAAACACTATTACAGTTGCGGCCAAATATATAGGCACCCTTGCACTTTTCTTGAATAATTCCCTATTTCTTCTAAAGTAAGTTGAAATTGAAAGAATCTTTTGGTCTCCACATCTATTGGGATTTTCAACATTACGGAACCAATTTTATTTGTGTAAACATACATTTACAATTTTAATTCAGAAAATAAAGCCATGGCATGGACAAAGTTCTTGTTAAATTTTTTTATAAGAGGCTTTTTttcttgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU892987 lncRNA upstream 127389 23637683 ~ 23637886 (+) True G784063
TU892979 lncRNA upstream 142594 23622448 ~ 23622681 (+) True G784056
TU892813 lncRNA upstream 277262 23487689 ~ 23488013 (+) True G783896
TU892783 lncRNA upstream 302314 23462700 ~ 23462961 (+) True G783866
TU892782 lncRNA upstream 303135 23461910 ~ 23462140 (+) True G783865
TU893028 lncRNA downstream 15934 23796210 ~ 23797923 (+) True G784096
TU893029 lncRNA downstream 27617 23807893 ~ 23808082 (+) True G784097
TU893100 lncRNA downstream 35573 23815849 ~ 23816178 (+) True G784165
TU893111 lncRNA downstream 52537 23832813 ~ 23833043 (+) True G784176
TU893114 lncRNA downstream 60979 23841255 ~ 23841479 (+) True G784179
XM_021615158.2 mRNA upstream 16104 23736299 ~ 23749171 (+) True LOC110531759
XM_021615149.2 mRNA upstream 653895 23105173 ~ 23111380 (+) False gba3
XM_036987597.1 mRNA upstream 653895 23105203 ~ 23111380 (+) False gba3
XM_021615148.2 mRNA upstream 653895 23105208 ~ 23111380 (+) False gba3
XM_021615146.2 mRNA upstream 753749 23010685 ~ 23011526 (+) True LOC110531753
XM_021615161.2 mRNA downstream 11716 23791992 ~ 23795323 (+) True LOC110531762
XM_036987610.1 mRNA downstream 21875 23802151 ~ 23803971 (+) False LOC110531761
XM_021615160.2 mRNA downstream 21899 23802175 ~ 23804811 (+) False LOC110531761
XM_021615163.2 mRNA downstream 53795 23834071 ~ 23839257 (+) False LOC110531763
XM_021617117.2 mRNA downstream 62202 23842478 ~ 23845111 (+) True LOC110532973
TU892315 other upstream 657236 23105471 ~ 23108039 (+) True gba3
TU892294 other upstream 718230 23044007 ~ 23047045 (+) False G783405
TU888672 other upstream 2663004 21101579 ~ 21102271 (+) True G779964
TU887946 other upstream 3683221 20079436 ~ 20082054 (+) True LOC110531706
TU887922 other upstream 3724992 20039611 ~ 20040283 (+) True G779291
TU893030 other downstream 22310 23802586 ~ 23804137 (+) True LOC110531761
TU893032 other downstream 53888 23834164 ~ 23839114 (+) True LOC110531763
TU893234 other downstream 301980 24082256 ~ 24087326 (+) True hacd4
TU894183 other downstream 802111 24582387 ~ 24582877 (+) True G785138
TU894522 other downstream 1150075 24930351 ~ 24952096 (+) True LOC110531788

Expression Profile