RNA id: XM_021615160.2


Basic Information

Item Value
RNA id XM_021615160.2
length 1697
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110531761
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23802151 ~ 23804811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGACTCATACTGAGGTAATCTATTATTTAATGAAATTAAGGAAAAATAAAACGTTTCCCTCAACTGCGTTACCTAATTCAGTCAGCAGTACCAACTCCAGTCCGCAGAAGGCGATATGCGTCTTTCAGCCGACGCTACCAGTGTGACGTACAATCTAGTTAACCGGACGcttcttcaacaacaacagcagctagTCAGCCACCACcgtagcttgctagccaacatagCCGAAGCATTGGGTATCTTTAGGTAATTTCGTTCTATATTAGCCACTGTGTTTTAAAAACACTTCTGTCGTCGTAAAGTTAGCTAGTTACCACCTTTCATTTCATATTTACGTTGCTATAGCTAGCTGGGTAGCTAAAACAGCCTAGTCGCTCAGGCTAACTAACTTGCCAACCTATCTGAGCATGAGTTTACTAAAATACTCTCCATTTGCTAAAGAAGAgggggtctgctggacggagaaagaagctctggggCTCGACATTGTcgtaaaagaggaggaggaagaggatgttccagtgaaaaaagaaaataaagaaattcctgtgaaagaagaggaaggagagttcagagtgaaagaggaggaggatgttactgtgaacgaagaggagaaagaaaaggaACAGGATACCGTTTTtggagtgaaggaggagggggagataacTGTCACAttgaaagaggaggatgagacTGGAGATCTGAATAACACCGAAGAGAGACCAGACTCTCACTCTGACAGCGGGGAGAGTCCTTCAGGGGAACCAGATGCAGAGACGTCCAAACAAGCGAGACGACaccactgttcccagtgtggaaagagttttactcagttaaGGGGCCTGAAAATGCATaggagaatacacacaggagatacACCTTACCACTGTAtccactgtggaaagagttttaggtGGTTAGGAAGCCTAAAGGACCATAAGAgaatacacacgggagagaagcctcACCACTGCTCCGAGTGTGGAAAGCGTTTTACCCGATTACTACACCTGACATCACatcaaaggacacacacaggagaaaagcctttcccatgttcccagtgtggaaagggttttacccAGTTAGGGAGCCTGAAggagcatgagagaatacacacaggagaaagcCCTTTCccatgctcccagtgtggaaagagttttacccgtTTAAGGAGCTTGAAGggacatgagaggacacacacaggagaaaggcctttccaatgttcccagtgtggaaagggttttaaccGGATAGGGAGTCTGAAggagcatgagaggacacacacaggagaaaagcctttccaatgttcTCAGTGTGGAAATAGATTTACCCGGTTAGGGAACCTGAAAGGGCATGAAAGAATACATACAAAaccacaggaggaggaggaggagaagaaatacCATTGCTCTCATTGTGGAAAGAAATTTTTCAGATCAGAGGACCTGAAAACACATGAGAGGATAGAGAGGCTGTGTTCTGACTTAAGTTTTTGACTGagaatgtgtgtttttgttcatgCCACATGAAATCAAATTGTAAATGCAAAAGCTTGCTAAaaaaataggcctacatttgtttttcatttttaaccTCGAGGCATACAGGATGGTTCTCAATATGCATACGTTCTCTTGAGTACTGTCTTGTGAGGATGAATGTGGAGAAGGcataaaacatttgatttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU893028 lncRNA upstream 4252 23796210 ~ 23797923 (+) True G784096
TU892987 lncRNA upstream 164289 23637683 ~ 23637886 (+) True G784063
TU892979 lncRNA upstream 179494 23622448 ~ 23622681 (+) True G784056
TU892813 lncRNA upstream 314162 23487689 ~ 23488013 (+) True G783896
TU892783 lncRNA upstream 339214 23462700 ~ 23462961 (+) True G783866
TU893029 lncRNA downstream 3082 23807893 ~ 23808082 (+) True G784097
TU893100 lncRNA downstream 11038 23815849 ~ 23816178 (+) True G784165
TU893111 lncRNA downstream 28002 23832813 ~ 23833043 (+) True G784176
TU893114 lncRNA downstream 36444 23841255 ~ 23841479 (+) True G784179
TU893144 lncRNA downstream 71520 23876331 ~ 23918330 (+) False G784200
XM_021615161.2 mRNA upstream 6852 23791992 ~ 23795323 (+) True LOC110531762
XM_021615159.2 mRNA upstream 21899 23765275 ~ 23780276 (+) False LOC110531760
XM_021615158.2 mRNA upstream 53004 23736299 ~ 23749171 (+) True LOC110531759
XM_036987597.1 mRNA upstream 690795 23105203 ~ 23111380 (+) False gba3
XM_021615163.2 mRNA downstream 29260 23834071 ~ 23839257 (+) False LOC110531763
XM_021617117.2 mRNA downstream 37667 23842478 ~ 23845111 (+) True LOC110532973
XM_036987616.1 mRNA downstream 72230 23877041 ~ 23886260 (+) False LOC110531766
XM_036987617.1 mRNA downstream 72230 23877041 ~ 23886260 (+) True LOC110531766
XM_036987618.1 mRNA downstream 81966 23886777 ~ 23914624 (+) False tspan5a
TU893055 other upstream 22674 23765705 ~ 23779501 (+) True LOC110531760
TU892315 other upstream 694136 23105471 ~ 23108039 (+) True gba3
TU892294 other upstream 755130 23044007 ~ 23047045 (+) False G783405
TU888672 other upstream 2699904 21101579 ~ 21102271 (+) True G779964
TU887946 other upstream 3720121 20079436 ~ 20082054 (+) True LOC110531706
TU893032 other downstream 29353 23834164 ~ 23839114 (+) True LOC110531763
TU893234 other downstream 277445 24082256 ~ 24087326 (+) True hacd4
TU894183 other downstream 777576 24582387 ~ 24582877 (+) True G785138
TU894522 other downstream 1125540 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 1722862 25527673 ~ 25532277 (+) True LOC110531825

Expression Profile