RNA id: TU893030



Basic Information


Item Value
RNA id TU893030
length 516
RNA type TUCP
GC content 0.47
exon number 3
gene id LOC110531761
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23802151 ~ 23804811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATGAGTTTACTAAAATACTCTCCATTTGCTAAAGAAGAgggggtctgctggacggagaaagaagctctggggCTCGACATTGTcgtaaaagaggaggaggaagaggatgttccagtgaaaaaagaaaataaagaaattcctgtgaaagaagaggaaggagagttcagagtgaaagaggaggaggatgagacTGGAGATCTGAATAACACCGAAGAGAGACCAGACTCTCACTCTGACAGCGGGGAGAGTCCTTCAGGGGAACCAGATGCAGAGACGTCCAAACAAGCGAGACGACaccactgttcccagtgtggaaagagttttactcagttaaGGGGCCTGAAAATGCATaggagaatacacacaggagatacACCTTACCACTGTAtccactgtggaaagagttttaggtGGTTAGGAAGCCTAAAGGACCATAAGAgaatacacacgggagagaagcctcACCACTGCTCCGAGTGTGGAAAGCGTTTTACCCGATTACTACACCTGACATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU893028 lncRNA upstream 4663 23796210 ~ 23797923 (+) True G784096
TU892987 lncRNA upstream 164700 23637683 ~ 23637886 (+) True G784063
TU892979 lncRNA upstream 179905 23622448 ~ 23622681 (+) True G784056
TU892813 lncRNA upstream 314573 23487689 ~ 23488013 (+) True G783896
TU892783 lncRNA upstream 339625 23462700 ~ 23462961 (+) True G783866
TU893029 lncRNA downstream 3756 23807893 ~ 23808082 (+) True G784097
TU893100 lncRNA downstream 11712 23815849 ~ 23816178 (+) True G784165
TU893111 lncRNA downstream 28676 23832813 ~ 23833043 (+) True G784176
TU893114 lncRNA downstream 37118 23841255 ~ 23841479 (+) True G784179
TU893144 lncRNA downstream 72194 23876331 ~ 23918330 (+) False G784200
XM_021615161.2 mRNA upstream 7263 23791992 ~ 23795323 (+) True LOC110531762
XM_021615159.2 mRNA upstream 22310 23765275 ~ 23780276 (+) False LOC110531760
XM_021615158.2 mRNA upstream 53415 23736299 ~ 23749171 (+) True LOC110531759
XM_021615149.2 mRNA upstream 691206 23105173 ~ 23111380 (+) False gba3
XM_036987597.1 mRNA upstream 691206 23105203 ~ 23111380 (+) False gba3
XM_021615163.2 mRNA downstream 29934 23834071 ~ 23839257 (+) False LOC110531763
XM_021617117.2 mRNA downstream 38341 23842478 ~ 23845111 (+) True LOC110532973
XM_036987616.1 mRNA downstream 72904 23877041 ~ 23886260 (+) False LOC110531766
XM_036987617.1 mRNA downstream 72904 23877041 ~ 23886260 (+) True LOC110531766
XM_036987618.1 mRNA downstream 82640 23886777 ~ 23914624 (+) False tspan5a
TU893055 other upstream 23085 23765705 ~ 23779501 (+) True LOC110531760
TU892315 other upstream 694547 23105471 ~ 23108039 (+) True gba3
TU892294 other upstream 755541 23044007 ~ 23047045 (+) False G783405
TU888672 other upstream 2700315 21101579 ~ 21102271 (+) True G779964
TU887946 other upstream 3720532 20079436 ~ 20082054 (+) True LOC110531706
TU893032 other downstream 30027 23834164 ~ 23839114 (+) True LOC110531763
TU893234 other downstream 278119 24082256 ~ 24087326 (+) True hacd4
TU894183 other downstream 778250 24582387 ~ 24582877 (+) True G785138
TU894522 other downstream 1126214 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 1723536 25527673 ~ 25532277 (+) True LOC110531825

Expression Profile