RNA id: XM_036987617.1


Basic Information

Item Value
RNA id XM_036987617.1
length 1554
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110531766
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23877041 ~ 23886260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaagaAGGCTGACCAAAAAGGGAAGAGACTAAACAGAGCGGAAAGAACCAAAGACAAACACTGAGAGCTCAGATCAAAGGGTTCCTTTAAGTACTCCTAGTGCTGTGTGCTTGGACCAAGACCTTTGTCATTATATACTAGGAGTGGGCTGAAAGAGAATGATATTTCACATCTGATTAtggccacacacacaaaaaaaacagATAGACGAGCAAACAACTACAGTTCTTCCGCACTGCAGTAATTATGTATGACTTGAGACCAGATGACCTGGAAGGTGCCATCGAGGAGAATAAGGAGCTGGGCAAAGCCATTCTGGAGATGCTGCACATCAATAAGCTGTCTGCACCCCATGTGGCCAAACCACACCCCTACATGAGACAGGTCTATCAGCTTCTGGACACACAAGAGGCCCGAGACTTGGGAAGCTCTGATGGAACACTGGTGCAGAGTTTCCGGAGTGTTCTGGACCCACCGCATGCCCCCGCAGGATGGATCTGGTTCAACGTCTCCCACCTGAAGCCTTCTATGGCCGTGGCTGAGCTTGTCCTGCTCCGCAAGACCCTCCACCCCGACCCCCTCAGTGTCACAGTGTCCCTGCACAGCCTGACCCGGGGTGCGAGTGGCCTGAGCGTGAGCCCTCCCCTCGAGGAGAGGATCCTGACCCTGGATCAGCTACCCCTGTCTGGCTATGACGTGTTCGACGTGTCCCCCTTCATGTTCTCCTCCATGCCTCTGGACGTGGTGGGCTTCCAGCTGCGCTACACGGACGAGAGTGGGAGCCTGGTGCTTCATGAGGCCCTGACCCAGAGCCTCTACTGCCTGGGAGGTGGTTCCCTCAGCGAGCCCCTGCTGGTGGTGTACCGGGCTAGGCCGCTTCGCCCCCAGACGACGGCTGCCACCAATGGGTTCCGGCCTGAGCGGAGACAGCGCCAGCACTGCCGCACGAGGAGCCACGAGAGGAGGAGCCTCTTCCTGGCCAAACGAAATGGCTACAAGCGCCGCCGCTTTGATGCCAGCTCTGACCCTCAGTGTCGGCTCTATCACCGCTATGTTGACTTCAACAAGGGCGATCTGGCAAACTGGATCCTACAGCCGTCAGGGTTCAATGCTACCTTCTGCAGAGGTACCTGCCACATTGGGAATTCAGAAGTGTCCATAGAAGGATTTAGACCAAGGAAAATAtcacctgaggagagatcagtgaATAGCTCCAACTGTGTTCCACTGGAGCTGTCATCTCTCACCGTGATGTATAGGAGTGAAACGGATGACGTCATAATCCAGAAGTTTAGAGACGCAAGGGCAGAGAGCTGCACATGCCAGCCACAGGCTAAGCCTTGAAACCAGCTCCCACATACAGTATTTACCTATCCTAGCCACTGGAGGGCGAAATTGCTTATTGAATCTGAAGTAGGATGCCTGCTAGAAGACCGGCTAGTAGACCTGGGAGAAAAGGATTAGGGTCATGTTATGTTTTGAGAAATCTATGAACGAGGGTTGGTATGTTCTGGTGTGGTGGGTGAATAAAAAATACACTTGAAAAATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU893114 lncRNA upstream 35562 23841255 ~ 23841479 (+) True G784179
TU893111 lncRNA upstream 43998 23832813 ~ 23833043 (+) True G784176
TU893100 lncRNA upstream 60863 23815849 ~ 23816178 (+) True G784165
TU893029 lncRNA upstream 68959 23807893 ~ 23808082 (+) True G784097
TU893028 lncRNA upstream 79118 23796210 ~ 23797923 (+) True G784096
TU893143 lncRNA downstream 30356 23916616 ~ 23918330 (+) True G784200
TU893125 lncRNA downstream 90297 23976557 ~ 23987332 (+) True LOC110531768
TU893211 lncRNA downstream 107929 23994189 ~ 23994389 (+) True G784262
TU893218 lncRNA downstream 131644 24017904 ~ 24018141 (+) True G784269
TU893226 lncRNA downstream 139542 24025802 ~ 24026012 (+) True G784277
XM_021617117.2 mRNA upstream 31930 23842478 ~ 23845111 (+) True LOC110532973
XM_021615163.2 mRNA upstream 37784 23834071 ~ 23839257 (+) False LOC110531763
XM_021615160.2 mRNA upstream 72230 23802175 ~ 23804811 (+) False LOC110531761
XM_036987610.1 mRNA upstream 73070 23802151 ~ 23803971 (+) False LOC110531761
XM_021615161.2 mRNA upstream 81718 23791992 ~ 23795323 (+) True LOC110531762
XM_036987618.1 mRNA downstream 517 23886777 ~ 23914624 (+) False tspan5a
XM_036987619.1 mRNA downstream 517 23886777 ~ 23914624 (+) True tspan5a
XR_005053208.1 mRNA downstream 90270 23976530 ~ 23987341 (+) False LOC110531768
XM_021615169.2 mRNA downstream 108966 23995226 ~ 24013837 (+) True LOC110531767
XM_021615175.2 mRNA downstream 191620 24077880 ~ 24087340 (+) False hacd4
TU893032 other upstream 37927 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 72904 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 97540 23765705 ~ 23779501 (+) True LOC110531760
TU892315 other upstream 769002 23105471 ~ 23108039 (+) True gba3
TU892294 other upstream 829996 23044007 ~ 23047045 (+) False G783405
TU893234 other downstream 195996 24082256 ~ 24087326 (+) True hacd4
TU894183 other downstream 696127 24582387 ~ 24582877 (+) True G785138
TU894522 other downstream 1044091 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 1641413 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 1658971 25545231 ~ 25546967 (+) True G786091

Expression Profile