RNA id: XM_036987623.1


Basic Information

Item Value
RNA id XM_036987623.1
length 3778
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110532975
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 23916608 ~ 23975554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGCTATTCCCTGTGCATGGATTCTGTGCCGCAACTGCAAGCAAGCGAGTATAGGAAGTGCGTTTCTTGTAGCGTTGGAGCAAAACTCTTGTGGTTGAAGTAGCGAATTTTGTCGTCGATGTGGATCAATATTACCAGCGGATAAATTACAGAACCATACCATCGTAGTTGTGAGTTCGGGGTCGTACGATAGGCTACGCTGCAAGCATCCCCGGCGCCATCTGGGAGGGTGAGGTTGTGGCTTGCTAGTATTGCCGGGTACGACACGGCGTGGGTTAGCTAAGCCTTCTGGGCGCATCCTAATTCGAAACTGATTGGGACTATCACGCGCACTACAGTAGCCAAATGGCAGATAACCTGAGTGATGCGTTGAAGAAGCTGAAGCTAGCCTCAGCTGACAGCACCACAGACAGTGTGGAGAGCTGCCTGGACTGCCTGCTCAAAGCACTGGCCCACAACAATGCTGACGCCAGTGAGAAGATCCAGGAGATGGGCGTTCTCCCCCTGCTTCCCACCCTGCTGGCCCCACAGTCCTCCTGCACCCCCAAAGTAGCCAACATCATAGCCGAGGTGGCCAAAAATGAGTTCATGCGTAGCCCCTGTGTGGAGGCGGGCCTCATCCCCCCCCTGGTGCAGCTGCTCCACTCCAAGGACCATGAGGTGCTGCTGCAGACAGGCCGTGCCCTAGGCAACATCTGCTACGACAGCCATGAGGGCAGGAGTGCAGTTGACCTGGCGGGAGGTGCTCAGATAGTTGCTGGACACATAAAGTCACTGTCCCAAAATACTGACCCGGACAATGGGAAGCTCTTGACTGTCTTTTGTGGCATGCTGATGAACTATAGCAATGATAATGACTCCTTGCAGGCCCAGCTGATCAACATGGGAGTGATCCCCACCCTGGTGAAGTTGCTGGGGCTCCACTCTGACAACACAGCCCTCACAGAGATGTGTCTCATTGCCTTCGGAAACCTTGCCGAGCTCGAGTCGAGCAAGGAGCAGTTTGCCTCCACGAACATCGCCGAGGAGCTGGTGCGTCTGTTCCAGAGGCAAGCGGAGCACGAGAAGAAGGAGATGATCTTTGAGGTCCTGGCTCCACTCGCTGAGAACGATGTGATCAAGCTGCAGTTGGTGGAGGCCGGCCTGGTGGAGTGTCTGTTAGATGTGGTAGTTCACACAGTGGATGGAGTGCGGGAGGAGGATGTGGCGCAGCTCAAAACAGCCTCCGACCTcatggtgctgctgctgctgggagatgAGTCCATGCAGAAGCTGTTTGAGGGGGGCAAGGGCAGTGTGTTCCAGAGGGTCCTGTCCTGGGTGCCATCCCACAACCACCAGCTGCAGCTGGCAGGGGCACTGGCCATCGCTAACTTCGCCCGCAACGATGGTAACTGCATCCACATGGTGGAATCAGGCATCGTTCAGAAGCTACTGGAGCTGCTGGATCGCCACGTGGACGAGGGCAACGTCACCGTGCAGCACGCGGCGCTCAGCGCCCTGCGCAACCTGGCCATTCCTGTGGTGAACAAGGCTAAGATGCTGTCGGCGGGTGTGTCAGATACGGTGTTGAAGTTCCTCCCGTCAGAGATGCCTCCTGTCCAGTTCAAACTGCTGGGCACGTTACGCATGCTCATCGACACACAAGCGGATGCGGCAGACCAGCTGGGGACCAATGGGAAGCTGGTGGAGCGTCTGGTAGAGTGGTGTGAGGCAAAGGACCACGCAGGGGTCATGGGAGAGTCCAATAGGCTGCTCTCAGCCCTCATCCGCCACAGCAAGTCAAAGGACGTCGTAAAAACAGTCATCCAGGGGGCAGGAGTGAAGCATTTAGTAGTCATGGCGACGAGTGAACACATGATCATGCAGAACGAGGCGCTGGTGGCTCTGGGCCTCATCGCCGGGTTGGACCTGGTGGGGGCCGAAAAGGACTTTGTTGGGGCTGGCCTGGTACAGGTGCTCCACAAGCTGCTGTCAGACGAGATGAGTGCGCCGGAGGTCAAATACAACTCTATGGTCATCATCTGTGCAGTCATGGGTTCAGAGCCTCTCCATAAAGAAGTGCAGGGGCTGGCCTTCATCGACGTGGTCTCCAAGCTGCGGTCGCACGAGAACAAAACGGTGTCCCACCAGGCGTCGCTCACAGAGCAGAGGCTAACGGCACAGAGCTAAATGACTCTTAACTCCCACAGCCCCCCGACCCCCAATGCCTGCCTCATAGCAAATCCCTGCCCCCCCATTCCTTTCTACAGAACCTTCCTCCCTCTGTGTGTTTCCCATCGTCACGTGCCAAGGtatcctgtccctctcccctgtcaACAGCCAGCTGTTCCAGctaactacccccccccctccaccaccccccgTGCATTCATCCTCCGTTCCAAGCAGCAGCTCCATCCATATTAAAAAAACAAGGCGCCAGTAGACAGCCTTTTCGTTTCGCAATAGATAGACATACAAAGAGAGAACACTTTTTATGATGACCATAGCTGTGAAACCCATTCACTTCAATAACTCGCCGATaacgtaaaaaaaatatttaaaaaataacacaaaaaaaaaacgatttaagtTCGGTGGTTTGAAAACAAATTTAGCAGCCAATGCATCCTTGCTGTGTTCTTTACTTCCGTGTCCCATGTTAGCTTGAGTACCAGCCCGAATTGAAGTCGACATGCATGTTTTAGTCCAGTTGATGGTGTATCCGTGTTCATTTTGAACCTGTCACGTACACGAAACCACAGCCCTGTGGCAAATCTTACAGAGAATAGTGTTCAATCATGTTTGTACTTAAACTGCCGTTTGAAAGGAGTTTGCTTGATAATGCCACTcaatcctctctcttccctttcacTTTCATACAAACCCAAACTAAACCTGACTTATTGTCCCAAACAACCTTACTGTTATATCAGGGGAATGTTTAGAATGGTGAATCGTTacagaatatatataataaatatatcaTGTAGAACAGAAATGTCAAGTAGAATAGGGTATGTTGTTGACTCCtgttacatttctatctgcaatgttgTGAACGTTTCACCCCCAACTGAACATACCCCAGGCTTGAGCTCCACTAGCACATACAAGTGCCCACCTGAGCATCCTCAGACATGGAGGAGATAATGCATAGGTTAGAAGTTAGAACCTCCAGAAGAACCCAGTCACTCACTCCCTGGTCTCTGAGAGTGTACAGTGAAGCAGTCAGCCATACCAGGTATATACTGTCTGGATTTGTTGCTTTTATCATGAGTCGGGGACCAATGGGGTAGCGCTGCACATTTCAGAAGATTCCTATATCATATTAAGTGGTTCCTAAGTTATTTAACACTATCCCCCCCCATAAGCCTATCAGAATGGGCCAGTCTGGGGACACCCTCCCCTGTCGACTTGTGGTACTGCTCTATGGTTTCTCCCTGCCAGTTCTTGGTTTGCATGTGTGATGGTTTCTCCCACTCGAAGTATCGATAACATGCACATTCCAGCATGTTGGATACTGCGTTAGGCACCGTCTGGTGACATAGGCGTTTTTTTATTATAAATTATTTGTTTATTAATCGGCACTTTGTTCTTTATTGTCAGGTATGAATGGTAATTTATCCGATTTGTAACCTCACAAAGACACAATCCAATCAAGATGTAACCACAAAGTAACTGCATTACGATATTATAAACATAAATGTTTGTTGTAAATGTCATTGATGAGTTGTACATTTGGAAGATTGTAACTCGAACAGATAATTAAAGATGATTGCTGGCGATAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU893664 lncRNA downstream 72575 23843780 ~ 23844033 (-) True G784671
TU893662 lncRNA downstream 75763 23840612 ~ 23840845 (-) True G784669
TU893661 lncRNA downstream 76399 23839964 ~ 23840209 (-) True G784668
TU893610 lncRNA downstream 137001 23765331 ~ 23779607 (-) True G784627
TU893553 lncRNA downstream 154979 23695924 ~ 23761629 (-) True G784578
TU893757 lncRNA upstream 63113 24038665 ~ 24039388 (-) True c9h4orf54
TU893786 lncRNA upstream 67274 24042826 ~ 24043264 (-) True G784767
TU893865 lncRNA upstream 180238 24155790 ~ 24156059 (-) True G784839
TU893874 lncRNA upstream 193828 24169380 ~ 24169591 (-) True G784848
TU893878 lncRNA upstream 201359 24176911 ~ 24177467 (-) True G784852
XM_036987611.1 mRNA downstream 39668 23845242 ~ 23876940 (-) False frem1a
XM_036987614.1 mRNA downstream 39668 23847251 ~ 23876940 (-) False frem1a
XM_036987615.1 mRNA downstream 39668 23854558 ~ 23876940 (-) False frem1a
XR_005053207.1 mRNA downstream 39668 23857391 ~ 23876940 (-) False frem1a
XM_036987613.1 mRNA downstream 39959 23845242 ~ 23876649 (-) False frem1a
XM_021615170.2 mRNA upstream 44458 24020010 ~ 24023690 (-) True trmt10a
XM_021615172.2 mRNA upstream 63074 24038626 ~ 24049740 (-) False c9h4orf54
XM_021615171.2 mRNA upstream 63074 24038626 ~ 24049741 (-) False c9h4orf54
XM_021615173.2 mRNA upstream 111869 24087421 ~ 24150879 (-) False focad
XM_021615174.2 mRNA upstream 111869 24087421 ~ 24150879 (-) True focad
TU893666 other downstream 69178 23845275 ~ 23847430 (-) True frem1a
TU893640 other downstream 108336 23806558 ~ 23808272 (-) True G784651
TU893641 other downstream 114924 23800783 ~ 23801684 (-) True G784652
TU893578 other downstream 177095 23737221 ~ 23739513 (-) True G784602
TU890849 other downstream 2140398 21775718 ~ 21776210 (-) True G782003
TU893822 other upstream 230901 24206453 ~ 24208655 (-) False LOC110531775
TU893823 other upstream 231100 24206652 ~ 24208655 (-) True LOC110531775
TU894414 other upstream 629933 24605485 ~ 24619053 (-) False G785329
TU894726 other upstream 987520 24963072 ~ 24965274 (-) True G785578
TU896572 other upstream 1315363 25290915 ~ 25291471 (-) True G787211

Expression Profile