RNA id: XM_021615177.2



Basic Information


Item Value
RNA id XM_021615177.2
length 1050
RNA type mRNA
GC content 0.45
exon number 7
gene id hacd4
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24077880 ~ 24087340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAAAAAGCACCAAACATCACTGAATATCCGACCAACCTCCTTGACGTCAGATAGTTGCCCTTGTATGAGAGAGATGTCGACTTCCTCGAATTTGGGATTTCCAAAAGCACAGGAAACAACTTTAGTACATCATTTACTTATTCGTCCGTCGTTTCCAGGTGAAATGAGTGTGTATTCTTTTCTTTTCTAGGCTCAGCATTCGACTTGCTTACCTTTTCCTGTATAACCTGCTTCAGTTCTGTGGGCACACATGGATATTTGCAAACATGACAGCCAGGTTTCTCACATTTGGTGGAGACGCGCTTGCTGACACCTTCTATGCTGTGGGGGTTGTGATGAGTCTATGCCAGCTGTTGTCCGTGCTGGAGCTCTTCCACATCGCTGATGGGATCGAGAAGGCACGCCTTCTGCCACGGTTTGTTCAAgttatgaccagaaACTTCCTACTGTTTATGGTGATAGTCAGTCAAGAGGAGATGCAGAGTAAACCAGTTGTGTGTGCACAGTTTTACCTGTGGAATATTCTAGATCTGTTAAGGTACCCCCATGTTCTCCTGTGTTTGATGGGCACGGATTCCTTTGGCATGCTGTGGGCTCGATACACCCTATCCATCCCCATCTACATAGTCTCAGTCATCACAGAAGGCATTACCATTCACCAATCACTGCCTTACTTTGAGTCATTGGGAACATACTCATTCCAGCTCAGCCTGCCGGTGTCTGCAGGCATTTACTTCCCTATCCTCCTGAAGGCATACTTACCGTTACTGGCTGTTGGGGCTTGTGTAACAGTGTGGCATTCGCTGAGGGCGAGAGAACTGCGTCTTGAGAAGTGGAATAAGAAGATTAAAAGGAAATGAGGTGGATTTCTTATTGCAGGATATATCACTTCGGGAGTTACTTaagaagacatgaagacattatgacCCAACAGCAAATGAGAACATCTTCCTAAGAAGCCTTCTTTGCACAACATCGCTTTGATGAGGTCACACTTTCGGGAATAGTTGGATAAGCAAAATGTTTATAAACGTGTTGAGTTGAGAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU893220 lncRNA upstream 36396 24038627 ~ 24041484 (+) True G784271
TU893226 lncRNA upstream 51868 24025802 ~ 24026012 (+) True G784277
TU893218 lncRNA upstream 59739 24017904 ~ 24018141 (+) True G784269
TU893211 lncRNA upstream 83491 23994189 ~ 23994389 (+) True G784262
TU893125 lncRNA upstream 90548 23976557 ~ 23987332 (+) True LOC110531768
TU893339 lncRNA downstream 85802 24173142 ~ 24173363 (+) True G784382
TU893322 lncRNA downstream 104277 24191617 ~ 24272071 (+) True G784366
TU893317 lncRNA downstream 119836 24207176 ~ 24208822 (+) False G784365
TU893318 lncRNA downstream 119836 24207176 ~ 24208822 (+) True G784365
TU893344 lncRNA downstream 159308 24246648 ~ 24248520 (+) True G784387
XM_021615169.2 mRNA upstream 64043 23995226 ~ 24013837 (+) True LOC110531767
XR_005053208.1 mRNA upstream 90539 23976530 ~ 23987341 (+) False LOC110531768
XM_036987618.1 mRNA upstream 163256 23886777 ~ 23914624 (+) False tspan5a
XM_036987619.1 mRNA upstream 163256 23886777 ~ 23914624 (+) True tspan5a
XM_036987617.1 mRNA upstream 191620 23877041 ~ 23886260 (+) True LOC110531766
XM_036987630.1 mRNA downstream 61706 24149046 ~ 24194370 (+) False mllt3
XM_021615178.2 mRNA downstream 67677 24155017 ~ 24194370 (+) False mllt3
XM_036987629.1 mRNA downstream 67677 24155017 ~ 24197744 (+) True mllt3
XM_021615194.2 mRNA downstream 282489 24369829 ~ 24403607 (+) False LOC110531780
XM_021615196.2 mRNA downstream 282491 24369831 ~ 24403607 (+) True LOC110531780
TU893032 other upstream 238766 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 273743 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 298379 23765705 ~ 23779501 (+) True LOC110531760
TU892315 other upstream 969841 23105471 ~ 23108039 (+) True gba3
TU892294 other upstream 1030835 23044007 ~ 23047045 (+) False G783405
TU894183 other downstream 495047 24582387 ~ 24582877 (+) True G785138
TU894522 other downstream 843011 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 1440333 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 1457891 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 1625657 25712997 ~ 25742909 (+) True G785962

Expression Profile