RNA id: XM_021615178.2


Basic Information

Item Value
RNA id XM_021615178.2
length 1982
RNA type mRNA
GC content 0.54
exon number 14
gene id mllt3
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24149046 ~ 24197744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATGCGTCTTATTTTGCTCCTCAGCCTTTGAAACTCCGGGTTGAGTTCAATTAGGAGAGACCATGTCCGCCATCAGCCATATGCACTTCTCTATCTTCTCATTTAAAACAAATTCTCCATGAAATAGCGGTAGAACGCGGCCTCGAGAATGGCCACATCGGGTGCTGTTCAGGTGAAACTAGAACTTGGACATCGTGCCCAGGTCAGAAAGAAACCCACGGTGGAAGGCTTTACGCACGACTGGATGGTGTTTGTCCGAGGACCAGAGCACAGCAACATTCAGCACTTTGTGGAAAAAGTTGTTTTTCACCTGCACGAAAGCTTCCCAAGACCAAAAAGAGTGTGCAAGGATCCACCCTATAAAGTGGAGGAGTCTGGATACGCAGGCTTCATCTTGCCCATTGAAGTGTACTTCAGAAATAAGGAAGAACCTAAGAAAGTGCGCTTCGACTACGACCTGTTTCTACACTTGGACGGCCACCCGCCTGTCAATCACCTGCGCTGCGAGAAGCTCACCTTCAACAATCCCACGGAGGAGTTCCGCAGGAAGCTGCTTAAAGCCGGCGGGCAACGGGATCCTCACAAAAGAAGTTCGGACGACTCTCAAGTGATGGTAATGCAGGAGGGTTCCACATCTCTGTTTGGCCAGCACCTCAAGCTGCCCACCCTCCCCAGCAACTCCCTGACATTGACCTTCTCAGACGCTAAGAAAAGCAAGGCCTTCCCAGGGTCGAAGGACGGCTTCAAAGGATCTGACTCtctcctcaccaccaccaccaccaccaccagctcaTCCAAGCTCCACAAACCCTCCAAGGACTACAAGGACAAGCCTTTGAAAGAGCCCAAAAGTGCCTTCAGAGACTGTAGCAGGGAACCAAGCAAAGCCTCCAAAGATCCATCCAAGAAACCCAAAGAGAACCAGCCTCTTCGGGACAACCCCCCCATCCCCAAGATGGGCTTCAAGGAGCCCAAGGCCATGTCCAAGGAGCACCGGCAGGATGGGGGCTACTCGCACGGGGCTGGGAATGGGACAGGGACTAACAAGCGACTGTCCATCACCGACAGCGAGGACCACCTGACCAAAAAGCGCAAGAAGGGCTTCTCGGAGTTGACGTTAAAGCCGCCGGGGGGCTCGTTGCTGCCGTACCCCCAATCCCACTACTCGGAAAAGAAACTGCTGAAGGACAAATCCCAGGTGCGGCCCGCAAAAGTGCGGGTGGACGGCGGTGAGGCGCTGGGGGAGCGCAGGAAGGCGCCGACGCTACCTCCGTTCTCGGAGTTGAGGGACGCCAATGACTCCGACATGGAGGACAATATGTCCACCAAATCAGATtcGGAGCAGCCCAGTCCAGCCAGTTCAAGCTCTAGTTCCAGTTCAGGATTTGCAGCCAGCCACAAACGCCAAGTGGCTGAATTCGTCCGCAGGAAGGTAGGGGCCGTCCCTGCCACAGCCCACACAGtgTTGGGTCCCCTTCGTTCAATAATTCATGACCTGCACTCCGACGACAACGAGGATGATTCGGAGGAGGACGACAACGATGACAACGACATGGACTCTGACCTGGAGCGACCAATGCACACGCACATGACACACCGCCACCGCCGGGTCAGCCTGAGTGACGGCACTGAGAGTGAGAACAGCTCAGCGCCCTCTCCCCACTCTCGCCACGAGCCCCCGCCTTTAATAAACACCAGTAATAACCAGATACTGGAGGTGAAGAGCCCCATTAAGCAAACAAAGCAGGATAAGAATAAAAACATTGACTGTGACAAGGCTTACCTGGATGAGCTGGTGGAGCTACACAGACGACTGAtgacactgagagagaggcacATACTCCAACAGATAGTGAACCTCATCGAGGAGACTGGACACTTCCACATCACAAACACCACTTTTGACTTTGACCTCTGCTCCCTGGACAAAACTACGGTGCGGAAGCTCCAGAGTTACCTAGAAACGTCTGGAACGTCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU893220 lncRNA upstream 113533 24038627 ~ 24041484 (+) True G784271
TU893226 lncRNA upstream 129005 24025802 ~ 24026012 (+) True G784277
TU893218 lncRNA upstream 136876 24017904 ~ 24018141 (+) True G784269
TU893211 lncRNA upstream 160628 23994189 ~ 23994389 (+) True G784262
TU893125 lncRNA upstream 167685 23976557 ~ 23987332 (+) True LOC110531768
TU893317 lncRNA downstream 12806 24207176 ~ 24208822 (+) False G784365
TU893318 lncRNA downstream 12806 24207176 ~ 24208822 (+) True G784365
TU893344 lncRNA downstream 52278 24246648 ~ 24248520 (+) True G784387
TU893400 lncRNA downstream 81674 24276044 ~ 24278695 (+) True G784437
TU894015 lncRNA downstream 228633 24423003 ~ 24423272 (+) True G784980
XM_021615175.2 mRNA upstream 67677 24077880 ~ 24087340 (+) False hacd4
XM_021615177.2 mRNA upstream 67677 24077880 ~ 24087340 (+) False hacd4
XM_021615169.2 mRNA upstream 141180 23995226 ~ 24013837 (+) True LOC110531767
XR_005053208.1 mRNA upstream 167676 23976530 ~ 23987341 (+) False LOC110531768
XM_036987619.1 mRNA upstream 240393 23886777 ~ 23914624 (+) True tspan5a
XM_021615194.2 mRNA downstream 175459 24369829 ~ 24403607 (+) False LOC110531780
XM_021615196.2 mRNA downstream 175461 24369831 ~ 24403607 (+) True LOC110531780
XM_021615198.2 mRNA downstream 262288 24456658 ~ 24471390 (+) False LOC110531781
XM_021615197.2 mRNA downstream 262288 24456658 ~ 24484458 (+) False LOC110531781
XR_005053211.1 mRNA downstream 283232 24477602 ~ 24483989 (+) True LOC110531781
TU893234 other upstream 67691 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 315903 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 350880 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 375516 23765705 ~ 23779501 (+) True LOC110531760
TU892315 other upstream 1046978 23105471 ~ 23108039 (+) True gba3
TU894183 other downstream 388017 24582387 ~ 24582877 (+) True G785138
TU894522 other downstream 735981 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 1333303 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 1350861 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 1518627 25712997 ~ 25742909 (+) True G785962

Expression Profile