RNA id: XM_021615181.2


Basic Information

Item Value
RNA id XM_021615181.2
length 1494
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110531776
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24224829 ~ 24228209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGAGGAGAAGAGTATAAATACCCCCAACAGGTTGCTCTAGCTGTAGGCAGTGTTCATGTTTGTGGGAGGTGTATTGGGTTGTAGCCTATGTGGGGAAAGTATAATAGAgcctttataaaaaaaatatataatttatattGAACAAACATAGCAAGCACtttaaaaaaggaactaagggtTGTCGCCATGGTTGCTACAAGCAAACTGAAGAGTAAAAACCCGGAATTCATATCAGAATTGATTGACCGTAGATACGACCAGACTTGTATTGAAAATGAGCTGGATTCCTGGGACCACTGTTTGGCTGAGCCCCACCTGAATGTGGAGGTGTCTGAGGACAGGACGTGTCAGCAGTTGGCCAAGATGTTAGAGAACTGTCTGTCACGGGCCAAGAAGACCACCATGCGTTGCTCTAAGGTGCTGGTCCCTGAGACGCTGACTCTGAGGATAGCACGCGATGTACTGCGCCTGTCGTCGGGCGAGCCGTGCGGCCTACGCGGCTGTGTACTCTACGTGCACCTGGAGCAGGAACAGTGCTGTAAGCAGCTGGAGCGCATCGTGTACAATGCAGACGTTGTGCCCACCTTTGAGCTGACGTTGGTGTTCAAGCAGGACTGTAGCGCATGGCCCAGTCTCAGGGACTTCCTGCACATTGGTGCGTGTTTCACTCCAGGCTTCAGGCATGCGCTCAAACTCAGTCCTGGCTTCCGGCTCATCAAGAAGAAGCTCTACTCATCCTTGGCTGGTACTGTGGTAGAGGAGTACTGAGAAGGGGGAAATTGAGGAAGGTGGGACACCATGGTTCAGTCAGCTGTCCTTGGGGTGGCATGTACAATGCTTTTCACTCCTGGAGGGTCTAATTTTCTACATGTTTTTTTGTATGAATACAGTTTGTGAACGAGTAGTGTTGTGCAAAGGTTATTGTTGTCCTGTCTGTTCCAATGTCCAGGATTCTACAACTGATTACTCAAAGTGGACGGACAAGTCTTGGTTACTGTAATGGATTGTCAAATGCCTAAACAAGATTagcataactttttttttttgactTCACTTCACTTTGAACAAACTTTGCCAATCCGTTTGTTTCCAGATTTGTCCACTGCTGTGCAGCAAAGTAAACCCACCTAGAGGCTATAGGAACAGGACTTGGAAAAGTTTGGGGGGGCCATAATGTTGGTGTTCAATGCTGAATTGAGGGTATGTAAGTGTTTGTTAGCGAGCCATTGAATGTTTGTCCTTGTGAACATGCTGCTCATTGACGGGCTCCAACCTTGACGGATGCCTTAAACTGCCACTTAGATCTTTCTTCATCTAAATGTTTTTTCTTACACTTGTTAGATCCTAGCTCCACAGGGGTTCTTCAGGGCTTGTTCTTTTTATACCTTTCTCAATTGATGGCTGTTTAAACTTAGGATTTTTTTGTTTAGTTGAGATTCCTGTTAAAGGCAATGGCAATCTTGTCTTTGAcaattaaacattttaaaccta

Function

GO:

id name namespace
GO:0009968 negative regulation of signal transduction biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU893878 lncRNA downstream 47362 24176911 ~ 24177467 (-) True G784852
TU893874 lncRNA downstream 55238 24169380 ~ 24169591 (-) True G784848
TU893865 lncRNA downstream 68770 24155790 ~ 24156059 (-) True G784839
TU893786 lncRNA downstream 181565 24042826 ~ 24043264 (-) True G784767
TU893757 lncRNA downstream 185441 24038665 ~ 24039388 (-) True c9h4orf54
TU894016 lncRNA upstream 195528 24423737 ~ 24424584 (-) True G784981
TU894022 lncRNA upstream 199997 24428206 ~ 24428473 (-) True G784987
TU894407 lncRNA upstream 363090 24591299 ~ 24591527 (-) True G785323
TU894413 lncRNA upstream 389985 24618194 ~ 24619053 (-) True G785329
TU894461 lncRNA upstream 513418 24741627 ~ 24765206 (-) True G785370
XM_021615180.2 mRNA downstream 15849 24207141 ~ 24208980 (-) False LOC110531775
XM_021615173.2 mRNA downstream 73950 24087421 ~ 24150879 (-) False focad
XM_021615174.2 mRNA downstream 73950 24087421 ~ 24150879 (-) True focad
XM_021615171.2 mRNA downstream 175088 24038626 ~ 24049741 (-) False c9h4orf54
XM_021615172.2 mRNA downstream 175089 24038626 ~ 24049740 (-) False c9h4orf54
XM_021615183.2 mRNA upstream 18442 24246651 ~ 24258977 (-) False LOC110531777
XM_021615185.2 mRNA upstream 18442 24246651 ~ 24258978 (-) False LOC110531777
XM_021615184.2 mRNA upstream 18442 24246651 ~ 24258979 (-) True LOC110531777
XM_021615191.2 mRNA upstream 41905 24270114 ~ 24367629 (-) False LOC110531778
XM_021615192.2 mRNA upstream 41905 24270114 ~ 24367629 (-) False LOC110531778
TU893822 other downstream 16174 24206453 ~ 24208655 (-) False LOC110531775
TU893823 other downstream 16174 24206652 ~ 24208655 (-) True LOC110531775
TU893666 other downstream 377399 23845275 ~ 23847430 (-) True frem1a
TU893640 other downstream 416557 23806558 ~ 23808272 (-) True G784651
TU893641 other downstream 423145 23800783 ~ 23801684 (-) True G784652
TU894414 other upstream 377276 24605485 ~ 24619053 (-) False G785329
TU894726 other upstream 734863 24963072 ~ 24965274 (-) True G785578
TU896572 other upstream 1062706 25290915 ~ 25291471 (-) True G787211
TU896576 other upstream 1065980 25294189 ~ 25303691 (-) True trmt44
TU896529 other upstream 1127145 25355354 ~ 25357816 (-) True LOC110531812

Expression Profile