RNA id: XM_021615197.2


Basic Information

Item Value
RNA id XM_021615197.2
length 2665
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110531781
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24456658 ~ 24484458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTAGTGTGTGCTTTGCCCAGTCTGGCGACAGCCAAATCAACAGGTAGTTTAATCTTTACATTCAAGTTTAGAGACCTGCTCTCACACTTTTAACTAGTACCCTCATTGGATATGAATGCGCCTTTCCACCTTCCAATCAACACCGTTCGGTTGTTCTACTATTACATTTCCGCATTAGTATTTAAATTCAACAAGTAAAAGATTGCAGCAGACAACCCATTAAATTGGTAGCGTTCTTTTGGTCCGTCTTCGCTATAAGGATTCTTTGGCTAAATCAGGGTACTGGAGACTGGGGCCATGTGGAAGTGCCTGTCCAAATATGTCTGCATCTTCCTCCTGCTGACCCTGTCAGGCGTCTTCTTCCTGTTCCGCAACATCAGCATTCTAGAGTGGAAGTTAGACCTATGCATCTGGGAACTATGCAGCAACCACGCAGAGGGCCCTACTCCCCTGGACCACAATCAAAGCTGTAACCACCTGAGCCAGGGCCAGGAGCGCACACCTGAGGAAGCTCTGGAGGAGCATTACCTCCTGGAGTCCATTGCCTGGCCAGAGCCTCCGCCCCGGCCCACGTCTATACCCCTGGAACAGACCAGTGACCCTGCGCACAGCCATTTTGCAGTGCTGCCAGCAGTGGGTGGGAGAGAGTGGCACGTGGGGGACCAGCTGGAGTCTCTGGTCCTTATGAAAGATTTCCAGGGACATCCCAAGAGCCATGGTGGGGACTTCTTGCTGGCTAGGCTGCACTCCCCAGAGCTGGGGGCGGGCGTTGCAGGACAGGTGTTGGACCACCAGAATGGGACCTACTCTGCCATTTTTCTGTTACTGTGGGAGGGGTCCGTACAAGTGGAGGTGACACTAGTTCATCCTAGTGAGGCAGTTGCTGTTCTACGAAACTTACGTGAAGAACGGCCCAACCGGGTGCTTTACAAGAGCCTGTTCAAATGTGGATTACTGTCTGAGACCACAATGTGTAACCTTTGTCTGCCGACCAACCAGGAGCCGCTGTGCAATTACACAGACCCCCACACGGGTGAACCCTGGTACTGTTACAAGCCTAAGCAGCTGCTGAGCTGTGACACACGGATCAACCACTTCAAGGCAGGCTACCAGAAAGATCTGATAACCGACAAAGAAGCACTGCTCTTCCAGAGTGGCGTAAACCTCAAAACACGTATTCGGGCTAAGGGGTCTGACAGTGTCACTGTGCTGCCTAAGAAGAAAGACAAACCAGAGGTGGAAAGCAGCCTTGCAAAGCCAGCGCCTGTCAGGACCACTCCCTCTGGGTATTACTTCCAAGGGTCATGGCAGTCCCTGGGTGATGTCGTGATGCGCCAGTTTAATGATCCAACTGCCATTACTCAGTGTTTGAAGGGCAAGGTGGTGTACATGTACGGAGACTCCACCGTTAGACAGTACTATGAGTTCCTCGCCAACTTCTTGCCAGAATTGATCAGTGTCATTATCAATACCAGTATCGGTTCAATTATCCCCTACACCCACATTTTTATAGCGTTGATCTCTCTCATCATTCGCTGCGTTGTTACAATCTTTGTTTCAATTATCCCATTGGTCCACTTTGTCATAGGTGCTGAGTGCTTCAATGACTGCCCTGTTATGTTCTTCATCCCTATCTACCTGATAGGATTGGGATGTTTTTATGTGGTCCTGGTGTTACTGTCTCTGTTTATGGCCATCAAAGACTGTCAAAGGTTCTGCTCATGGGTCATATGGATCAGTCTGCTCATTCTGATGTTCTGCCTCTTTGCTGGTAGTGGGGTTGTTTTCTCTGTATTTCAAACAACAAGCTACAACCCGACCCTCAGCGACGGGAGCTCCAACCAGACCATTGCCAACGAGAGCTACAACCATACCTTCTGCAGTGGGAGCAACAACCAGTCCATCACCAACCCAGAGTACTGCAACAAAACTCTATACCTGTTTGCATTCTCTACCTCTCTGATATGGATCCTTATGGTTGTTCTGTTAACGGTTGGCCTCAAGTTCTATGGCTGCGTCAGAATTGAGATGATCTTAAAGAGCTTGGGGTTGTGGTTGTTAGGTCATGACCCTATTTATTTGTGTTTCGGAGAGTCCACTATACAATAAGAAACAGTAGTCATACTCATATGGAGGCTATTATGAAAGGCAGCCCACAGGTGCTTtagttgattgattgttttttaaatcTTTGGGTTACATTTTTGGAGGATGAGAACATCTTCAGAGAACTTGACCAATTAAAAGTGGATAGAAAGTATTAATGGACCTGTATACCTTTTTAAATCATTTAATCTTGGAGTACTCCTTTTGTCTTTAATCGTCTTTTCAAGGCATGCCTGGTTGATTATGCCTGCTTCAAAACGATTAGAGGAAAAAGTGTTTATTTACAGTTGTGCTTTCATTCTTTGTACTCTACCTTTTTGATTCAAAATATAGCCTGTTAGAGAAATTGTTTGATAGTGTGTAAAGTGAATGGGTCATGCAGATTGACATACTTTATCACAAAAAGGGACAACCAACTACACCACCACTTTCAATCTATGCGCTTGATATCTGAccaacagatcactgaccatttcgaatcccactgtaccttctccgctgtgcaatccagtttccgagctggtcacgggtgcacctcagccaccctCAAGGTacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU894061 lncRNA upstream 4586 24451800 ~ 24452072 (+) True G785026
TU894056 lncRNA upstream 9506 24446865 ~ 24447152 (+) True G785021
TU894030 lncRNA upstream 24468 24431955 ~ 24432190 (+) True G784995
TU894015 lncRNA upstream 33386 24423003 ~ 24423272 (+) True G784980
TU893400 lncRNA upstream 177963 24276044 ~ 24278695 (+) True G784437
TU894070 lncRNA downstream 643 24485101 ~ 24485549 (+) True G785033
TU894236 lncRNA downstream 169100 24653558 ~ 24653869 (+) True G785182
TU894255 lncRNA downstream 220992 24705450 ~ 24771803 (+) True G785196
TU894263 lncRNA downstream 289305 24773763 ~ 24818004 (+) True G785198
TU894341 lncRNA downstream 325256 24809714 ~ 24810262 (+) True G785262
XM_021615194.2 mRNA upstream 53051 24369829 ~ 24403607 (+) False LOC110531780
XM_021615196.2 mRNA upstream 53051 24369831 ~ 24403607 (+) True LOC110531780
XM_036987629.1 mRNA upstream 258914 24155017 ~ 24197744 (+) True mllt3
XM_036987630.1 mRNA upstream 262288 24149046 ~ 24194370 (+) False mllt3
XM_021615206.2 mRNA downstream 116876 24601334 ~ 24624296 (+) True LOC110531785
XM_021615217.2 mRNA downstream 235567 24720025 ~ 24726878 (+) False LOC110531793
XM_021615220.2 mRNA downstream 236675 24721133 ~ 24725940 (+) False LOC110531793
XM_021615218.2 mRNA downstream 236679 24721137 ~ 24726878 (+) True LOC110531793
XM_021615216.2 mRNA downstream 251207 24735665 ~ 24745178 (+) False LOC110531798
TU893234 other upstream 369332 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 617544 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 652521 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 677157 23765705 ~ 23779501 (+) True LOC110531760
TU892315 other upstream 1348619 23105471 ~ 23108039 (+) True gba3
TU894183 other downstream 97929 24582387 ~ 24582877 (+) True G785138
TU894522 other downstream 445893 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 1043215 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 1060773 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 1228539 25712997 ~ 25742909 (+) True G785962

Expression Profile