RNA id: XR_005053502.1



Basic Information


Item Value
RNA id XR_005053502.1
length 131
RNA type mRNA
GC content 0.53
exon number 1
gene id LOC118966243
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24713641 ~ 24713771 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGGAGGCAGATACCTGGGCAGTTCTGAGCTGTGCTCTGTTCGTCACTAGTCCTCCCTATAGCATACCTGCTCTCTGATGACCGGGGCGAGTTGAGTGAAATCGCAACGGACAGATACGGAGCAGATAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU894413 lncRNA downstream 94588 24618194 ~ 24619053 (-) True G785329
TU894407 lncRNA downstream 122114 24591299 ~ 24591527 (-) True G785323
TU894022 lncRNA downstream 285168 24428206 ~ 24428473 (-) True G784987
TU894016 lncRNA downstream 289057 24423737 ~ 24424584 (-) True G784981
TU893878 lncRNA downstream 536174 24176911 ~ 24177467 (-) True G784852
TU894461 lncRNA upstream 27856 24741627 ~ 24765206 (-) True G785370
TU894494 lncRNA upstream 92399 24806170 ~ 24808258 (-) True G785397
TU894495 lncRNA upstream 93986 24807757 ~ 24808732 (-) True G785398
TU894591 lncRNA upstream 112365 24826136 ~ 24826543 (-) True G785481
TU894592 lncRNA upstream 112960 24826731 ~ 24826987 (-) True G785482
XR_005053503.1 mRNA downstream 814 24712697 ~ 24712827 (-) True LOC118966244
XM_021615208.2 mRNA downstream 7912 24630697 ~ 24705729 (-) False LOC110531786
XM_021615210.2 mRNA downstream 7912 24630697 ~ 24705729 (-) False LOC110531786
XM_036987639.1 mRNA downstream 7912 24630697 ~ 24705729 (-) False LOC110531786
XM_036987641.1 mRNA downstream 7912 24630697 ~ 24705729 (-) True LOC110531786
XR_002474755.2 mRNA upstream 38266 24752037 ~ 24759779 (-) True LOC110531803
XM_021615226.2 mRNA upstream 56661 24770432 ~ 24776638 (-) False LOC110531797
XM_021615225.2 mRNA upstream 57312 24771083 ~ 24777354 (-) True LOC110531797
XR_005053212.1 mRNA upstream 70120 24783891 ~ 24792169 (-) False LOC110531801
XM_036987648.1 mRNA upstream 70120 24783891 ~ 24792192 (-) True LOC110531801
TU894414 other downstream 94588 24605485 ~ 24619053 (-) False G785329
TU893822 other downstream 504986 24206453 ~ 24208655 (-) False LOC110531775
TU893823 other downstream 504986 24206652 ~ 24208655 (-) True LOC110531775
TU893666 other downstream 866211 23845275 ~ 23847430 (-) True frem1a
TU893640 other downstream 905369 23806558 ~ 23808272 (-) True G784651
TU894726 other upstream 249301 24963072 ~ 24965274 (-) True G785578
TU896572 other upstream 577144 25290915 ~ 25291471 (-) True G787211
TU896576 other upstream 580418 25294189 ~ 25303691 (-) True trmt44
TU896529 other upstream 641583 25355354 ~ 25357816 (-) True LOC110531812
TU896757 other upstream 808267 25522038 ~ 25523512 (-) False G787386

Expression Profile