RNA id: XM_021615216.2


Basic Information

Item Value
RNA id XM_021615216.2
length 2959
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110531798
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24735665 ~ 24770025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATACCACGTGACTCACATAATGCGGAAGAAATTGAGCATGTTGAAGAAAAGCTGCAGAGACTCGTTTCAAAACATTTCTGGTTgcataaaaaaaatgtacttgCTAGTTAAAATGGTTGTGACAAGTCGAGCCTAGTAGTTCAGAAAATAGTCAAACCATGACTTAGGGAGGCACATTGTTTACTAGCCAGGCCAGCTGTCGATGATGTTTTGCTGGCAATgaataattagctagctaacgtttaaAATCACCCTTTGCCGCACCTGCTAGCTAATTGGAAAGTTTCCCCAAGTGAATGGGGAAATGGACCCTACAACATTTTCAGGTCCccatctccctctatcctccctgcGTCTCCTGGTGCCACCACTACGTCTGATGTCTGCATCCATGTGGCAAGTGGCACAGCAGCGTAACGTGATGCAGTATGGGAAGCTGGAGGAGTTTGTGACTCTGGTGACAGAGATGGTTCCGGAGCTCCTGACGCTCAAGCAGAGGGTCCAACTCATCCTGGGACTGAGAGCGAGGCTGGTTCTTGAATTGTGTCGTGGTGTGGAGTCTAACCCAGCTGGCTACAAAACCATCCAGCCCCACCTGGACAGAATCCATTCATGCACAACACATAAAGGGAGCGAAGACAAGGAAGTGGAGGCCTCAAAGGATAACTTTGTGGAGCTGGTCCAAACTCTGCTAGAAGACTCAATGAAGAGGGAACATTTTTTTCAGGAGGTGTTCCCTGTACAGTACAGCACTAGGTATGACACAGCGCTACAGATACTTGTGTGGCAGTTCTTTGACAGACTGGAGGAGATGCTGCCAGTGCCCAGCTTTACACAGacaTCATCCATTCTCAACCTGACCCCTACTGACCTGGAAGAGTGTCAGCAGTCTTTCTCTGACCCTGAGCATCTGAAAACACTGCTGCAGCATCATAGAAATCTGGGGCACCTAAAAAAAGATTTTTTGTTCTATGACTCTGATAACATCCTGTCCACGTTGTCCTTCCTCGCTCCCTCACTGAAGTCTAAACATACCAAAAGAGGCATAGAAGAAGGCACGGTGAAGAACGAGAGCGAtgtgaggagaaagggagagaacgaAGAGGCTGAAGGACCGAAAGAACAGGAGAGTGGTGAGGAGGGACAGCAAGAAGTCAGTGGGGAGGACAAATACGCCAATGAGGGAAGTGATGAGGGCGCTGAAAGACTGGAAGAGGCTGGGGAATCCTCTGGGAATTCTGGGCAGCAGAAACAACCATCATTAGTGGCCGTCAATGGACAAGCTAAAGCCAAGCCCCCCCAGTCCCAGGGCTTTTCCTGCCCACAGTGCCAGTTCTCCAACAGGAGATGGCTCACCCTTCAGAAGCACATCAAGAAGAACCATCCAAAGGAGGACCGTGGGATCCTGGACTCTGGAGAAGCTGGAGCTGAGAACAACGTCCTGCCTGTCAGTGAGACAGAAAGCTCCTCGGCTAAGAAGACCAGGAAGAACAGGTACAtctgctcccagtgtgggaagGGTCACAAGTGCTCATATGAACTGAGACGACACGAAACCGTTCACTCTGAGGTGAAGCCCTTCCATTGTGACCAGTGTGAGAAGAGATACAAAACAAAGGTGGCTCTAAAACAACACCATCGAGTTCACACTGGAGAAAGGCCATATGTTTGCTCACATTGTGGCAGAGGCTTTAGGTCTGCAGGAACTTTACAATCACATGTACGCACCCACACCGGGGAGCAACCTTTTGTCTGTTCTATATGTGGGAAGGGATTTATTCAACATCAAATACTGATAGGTCACCTCCGGTGGCATAGAGGTGAGAAACCGTTCTTATGTACCgtttgtggaaagagttttagtaCTTCAGGTGCCTTGTTGGTACACTCAcgaacacacacagatgaacgCCCCAAAAGCTGTGAGCATTGTGGGAAGAGGTTTAGAAGATGTTACGATCTCACAATACATCGGCGGATCCACACTGGCGAGCGGCCGTTCTCCTGCACACAGTGCGACAAATGCTTCACGTCCCACAGCGACCTTAGCAGACACATGCGAATtcatacaggagagaaaccttaccagTGTAAAATGTGCGATAGGAGATTCACTGAAAGCGGCAACCTGAAAGTACATCAGCGGGTTCATCGGGGAACAGCCACAAATGTACGGGTTTCAGTGTGTAATATCAGTACGGCCCACCACAAGTCACCAAGTGTGgcaagaaagaaggaaagaaagaaagacaatgTTCCACCACTCCTTGTTGGACAGGAGTTGCCGTAGCCACAGTGTATCATGTTCTAACACACATTTTGGAACAACGTTATGATTCCCGGGCCAtaaaatttttattttttatttcatttaaagtTGACTTGCTAAGATAATTGGCTATTTTGTGATAGCGAGGCATTTAATGACAGCGTAATATGATTTCTCGTAATATTGATGTCATTGGTTACTTTATTTCTCAAGGTGGTAGCTTTTCAACACCATATATTAGGTAATCACACATACGTATTCACTGTATCCTGCCCACTCAGTCACTGAAATGAAAGCTTGTCAGGGTCGAACATTTCATAACGGATTGATACAGGAGTACTGTTATTGCAGAATTACACAGCAAGGTAATATTACATTTGTGGTGTGGCCCTCTGGACCTCATCGAAGACAGAATGTGGCCCCTGAAGAAAATTAGTTTGAGACTCCTGGTCTTGAGGGACATTGAGCTCTGTACAGGACTATGTTGGTGAAGATAGTGATGCTCGTTAGATCTATAGTTTGACTAAGGTGATTTGTctaaaccagtggttcccaaccagcaAAACTTTTCCTCatcttgataaaaaaaaataacactcACTTATAAACGTGACCTGTGGAATGCACATGGAATTTTGATTTGGGAGCACTCATGCTGGTCAAATAATACATTAAATGGCACATGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU894236 lncRNA upstream 81796 24653558 ~ 24653869 (+) True G785182
TU894070 lncRNA upstream 250116 24485101 ~ 24485549 (+) True G785033
TU894083 lncRNA upstream 259601 24475761 ~ 24476064 (+) True G785046
TU894061 lncRNA upstream 283593 24451800 ~ 24452072 (+) True G785026
TU894056 lncRNA upstream 288513 24446865 ~ 24447152 (+) True G785021
TU894263 lncRNA downstream 28585 24773763 ~ 24818004 (+) True G785198
TU894341 lncRNA downstream 64536 24809714 ~ 24810262 (+) True G785262
TU894502 lncRNA downstream 79439 24824617 ~ 24824840 (+) True G785404
TU894508 lncRNA downstream 82706 24827884 ~ 24828109 (+) True G785410
TU894537 lncRNA downstream 152981 24898159 ~ 25000005 (+) True G785433
XM_021615217.2 mRNA upstream 8787 24720025 ~ 24726878 (+) False LOC110531793
XM_021615218.2 mRNA upstream 8787 24721137 ~ 24726878 (+) True LOC110531793
XM_021615220.2 mRNA upstream 9725 24721133 ~ 24725940 (+) False LOC110531793
XM_021615206.2 mRNA upstream 111369 24601334 ~ 24624296 (+) True LOC110531785
XM_021615197.2 mRNA upstream 251207 24456658 ~ 24484458 (+) False LOC110531781
XM_036987646.1 mRNA downstream 14404 24759582 ~ 24770025 (+) False LOC110531798
XM_036987647.1 mRNA downstream 14424 24759602 ~ 24770025 (+) True LOC110531798
XM_021615224.2 mRNA downstream 35689 24780867 ~ 24783674 (+) True LOC110531796
XR_005053447.1 mRNA downstream 49435 24794613 ~ 24795514 (+) True LOC110531804
XR_005053213.1 mRNA downstream 50475 24795653 ~ 24800154 (+) True LOC118966018
TU894183 other upstream 152788 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 648339 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 896551 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 931528 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 956164 23765705 ~ 23779501 (+) True LOC110531760
TU894522 other downstream 185173 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 782495 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 800053 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 967819 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 1212906 25958084 ~ 25958867 (+) True G786218

Expression Profile