RNA id: XM_036987647.1


Basic Information

Item Value
RNA id XM_036987647.1
length 3028
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110531798
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24735665 ~ 24770025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCTCTCTGGCGTGGTGAAGAAAAGCTGCAGACTCGTTTCAAAACATTTCTGGTTGCAGATAAAAAGTACTTACCTTGTTTAATGGTTGTGACAAGTCGAACTTAGTAGTTTAGAAAACAGTAAAACCCTGTCTTTGGGCGAAATATTGTTTACTAGCCAAGGCAGCTAAACATTGTGTTGGCAAtgcatagctaacgttagctagctgacgTTTAAACCCACATTTTGCCGCGTTGCAGCACCTGCTAACCATTTGGAAAGTTGCCCCAAGTGAGTGGGGAAATGTATCCCACGTCAACATTTTCAGGTCCtcatctccctctatcctccttgCGTCTTCTGGTGCCACCACTACGTCTGATGTCTGCATCCATGTGGCAAGTGGCTCAGCAGCGTAACGTGATGCAGTATGGGAAGCTGGAGGAGTTTGTGACTCTGGTGACAGAGATGGTTCCGGAGCTCCTGACGCTCAAGCAGAGGGTTCAACTCATCCTGGGACTGAGAGCGAGGCTGGTTCTTGAATTGTGTCGTGGTGTGGAGTCTAACTCAGCTGGCTACAAAACCATCCAGCCCCACCTGGACAGAATCCATTCATGCACAACACATAAAGGGAGCAAAGACAGATCTGTGGAGGACTCAAAGGATAACTTTGTGGAGCTGGTCCAAACTCTGCTAGAAGACTCAACAAAGAGGGAACATTTTTTTCAGGAGGTGTTCCCTGTACAGTACAGCACTAGGTATGACACAGCGCTACAGATACTGGTGTGGCAGTTCTTTGACAGACTGGAGGAGATGATGCCAGTGCCCAGCTTTACACAGACAGCATCCATTCTCAACTTGACCCCTATTGACCTGGAAGAGTGTCAGCAGTCTTTCTCTGACCCTGAGCATCTGAAAACACTGCTGCAGCATCATAGAAATCTGGGGCACCTAAAAAAAGATCTTTTCTTCTATGACTCTGATACCATCCTGTCCACGTTGTCCTGCCTTGCTCCCTCACTGAAGTCTAAACAGACCAaaagaggcagagaaaaaggCACGGTGACGAACAAGAGTGAtgtgaggagaaagggagagaatgaCAATGCTCAAGGACTGAAAGaacaggagagtggagaggagggacagCAAGAAGTCAGTGGGGAGGACAAATACGCCAATGAGGGAAGTGATGAGGGCACTGAAAGACTGGAAGAGGCTGGGGAATCCTCTGGGAATTCTGGGCAGCAGAAACAGCCATCATTAGTAGGCATCAATGGACAAGCTAAAGCCAAGCCCCCCCCCAGTCCCAGGGCTTTTCCTGCTCACAGTGCCAGTTCTCCCACAGGAGATGGCTCATCCTTCAGGAGCACATCAAGAAGAACCATCCAAAGGAGGACAGTGGGATCGTGGACTTTGGAGAAGCTGGAGCTGAGAACAACGTCCTGCCTGTCAGTGAGACAGAAAGCTCCTCGGCCAAGAAGACCAGGAAGAACAGGTACAcctgctcccagtgtgggaaAGGTTTCAGAAACCTCTGTGACCTGAGACGACATGAAAGCGTTCACTCTGAAGCCAGGCCGTTCCATTGTGACCAGTGTGAGAAGAGATACAAAACGAAGGGATGTCTAAAACAGCACCAGAAAGTTCACCAGGCAAATCGCATTGAAGAAAGGACATAAGTTTGCTCACATTGTGGCAGGGGCTTTAGGAAAACAGAAATCTTAAAGTCACATGAACGCACTCACACCGGGGAGCGACCTTATGTCTGTTCTATCTGTGGGAAGGGATTTATACAGTCCAATGGCCTGACGCAACACCTCCAGATGCACAGAGGGGAGAAACCGTACTTATGTAGCGTTTGTGGAATGACTTTAAGCACCTCAGGTCAGTTGAGGGTACAcatgagaacacacacaggtgagCAACCCTACAGCTGTCAACTTTGTGGGAGGAGGTTCAAACAACCTGAAAGTCTCACAGTGCATCTGCAGAGTCACACAGGCCAGCGGCCATACCCCTGCACACTGTGTGACAAACGTTTTGCATCCAGCAGCTGCGTTAAAAAACACATGAGAACTCATACAGGGGAGAAACCTTATCAGTGTATAAGGTGTGGTAAGAGATTCACTGAAAGCGGCAACCTGAAAATACAGCAGCGAGTTCATCGAGAAAAAGTCTTAAGTTGTCCGAAAGTTCTTGAGGGACGTTGTGCTCTgtacagcagggttccccaactggcgacCCGCGGACTGAATTTagattttcattgttggacataagactgtaaaaacaccaggaaatcatctATTGGTTTTCATTTCTGAAATATATTCCCAAGTACTGCCACGCATAATAGACAGACATATTTGATTGtatagaaataataataattgattggatttatatagcacttttcTGCTAACTGAGGTACTCAAAGTACTTTACATAGTAGGCggaaactcacctcatccactATCAATGTGCAGCACCCACCTCAGTGATGCACAGTGACCATTTTTATGCCAAAACTCTACCCCACACATCAGCTATCAGGTGGAGAGGTGAGTAGTGATATATTCCATTTAGGAATGAGGGGGATGATTCAGTGGCCATGATGGAATGTGGCCAGGTTGGGAATTTAACCATGACACTGTGGTCAACATCCATACTCTTACAATAAGCACCATGGGATTCACCACGGAGAGTCACGACACCCATTTTAACGTGCCATCCAAAAGAAGGCACCCTTCACAGGACAATGTTCCcaaatgtaatcaaggtttgacatttttgttttagtcaaatatctGTTTAGGCGTCTTGCGGTCATTTTGCAGTAtaaaaccattttttttattatgttcCGGCCCACGACCATCCGCTCCAGAAAGAAAttggcccgcggctgaatctaatTGATGATCCCTGCATGACACATTATGAAGGCTGTCATAATTGTTGAGGATTCCTGGAAAAGTTTTTGTATAGATTTTGTGTATATGACTATTCCTCTTGTTAATAAAGAAGACATTATGAGCAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU894236 lncRNA upstream 105733 24653558 ~ 24653869 (+) True G785182
TU894070 lncRNA upstream 274053 24485101 ~ 24485549 (+) True G785033
TU894083 lncRNA upstream 283538 24475761 ~ 24476064 (+) True G785046
TU894061 lncRNA upstream 307530 24451800 ~ 24452072 (+) True G785026
TU894056 lncRNA upstream 312450 24446865 ~ 24447152 (+) True G785021
TU894263 lncRNA downstream 3738 24773763 ~ 24818004 (+) True G785198
TU894341 lncRNA downstream 39689 24809714 ~ 24810262 (+) True G785262
TU894502 lncRNA downstream 54592 24824617 ~ 24824840 (+) True G785404
TU894508 lncRNA downstream 57859 24827884 ~ 24828109 (+) True G785410
TU894537 lncRNA downstream 128134 24898159 ~ 25000005 (+) True G785433
XM_021615216.2 mRNA upstream 14424 24735665 ~ 24745178 (+) False LOC110531798
XM_036987643.1 mRNA upstream 14424 24735665 ~ 24745178 (+) False LOC110531798
XM_021615217.2 mRNA upstream 32724 24720025 ~ 24726878 (+) False LOC110531793
XM_021615224.2 mRNA downstream 10842 24780867 ~ 24783674 (+) True LOC110531796
XR_005053447.1 mRNA downstream 24588 24794613 ~ 24795514 (+) True LOC110531804
XR_005053213.1 mRNA downstream 25628 24795653 ~ 24800154 (+) True LOC118966018
XM_036987652.1 mRNA downstream 55274 24825299 ~ 24845982 (+) False LOC110531795
XM_036987653.1 mRNA downstream 55274 24825299 ~ 24845982 (+) False LOC110531795
TU894183 other upstream 176725 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 672276 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 920488 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 955465 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 980101 23765705 ~ 23779501 (+) True LOC110531760
TU894522 other downstream 160326 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 757648 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 775206 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 942972 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 1188059 25958084 ~ 25958867 (+) True G786218

Expression Profile