RNA id: XM_021615224.2


Basic Information

Item Value
RNA id XM_021615224.2
length 1825
RNA type mRNA
GC content 0.57
exon number 4
gene id LOC110531796
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24780867 ~ 24783674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagtgagagtagagagagtgaatAATCCACGGGCATTTATTTTTAGAAGCTCTCTCGGTCGCTACGCACTTCATGTAGCCTACTACAACACAGCCCATGTTCTTCTGGTCAATAATTGAAACGGGTTTGGTACATTGGATTGGAACACAACACCCGAGCGCACAGCGTAAAGACGCGCAGGCCTATTCCGTAGTGTGATGTTTCAAGCTATATCCGGAATTTGGAGATGCCCACCTTTGCCAATGAGGCATCACCACTGCTCACGAGGATCCCTTCCAGAGGAACCGTGTGTCCTGATCCCAGGCTGCATGGTCTCGGAATACCAGGAAAAGTACCCTGCCTACTGCACCACTGTTGTCCGGGCAGCCAAGAAGCAGAATAATGAGTATCAGCGTCTGGAGGGAAGGATATCCAACATGACTACTTTCAAGTCAGACTACGTGGCCCATGAAGTGACCCAGAGGCCCCCAAAGGTCACCAAGGTGTATGTGCCACCTGACGGGAGAATGAGACACAGCAGCACCTACGCCAGGGACTACCCAACACACCCTGTTCAGAAGCACATCGTGACCAAGCCAGAAGAGTATCATCCGCCCACAGCAAAGATGGTCGCTCAGTCCTTATACAAAGGGGAATTCCGAGCATGGCACAACCAGAAAGTCCAACCCTACAGGACCTGTGACAACCTGAAGCTGAACGACAGCAAGTTCGAGGTGACCACCACCTTCCAAGACGACTACTGCCACAAGGGCCCAGCTGAGGCCAGGGAGAGCTTCAAACCGGCTGCCGACGCCCGAGAGACCCTGCCCTTTGACGGCACCACCAACTACCAGACGCAGTATGTCCCCCACCCGGTCCAGCCCAGGCAGCCCAAAGAGAGGGCCGTCTACAGGCCCACCAGCGCCCCCCTCAATGGGGTCTCCACCCACAGGCAGGACTACCGGGGCCTGCCAGCTGAGCCCGCCAAGCCCTTTAGGGCCAAGGTGGCCTGGGAGAGCAGCCCGGCTGTATTCCAGGGGACCAGTGAGTTCCGCGACCAGTACAAGGCCTGGCCCCTGCAGCCCAAGCACCGGCACCAGGCTGAGGAGTACTGCCCACCCGAGGGCACTATGGTCGGTCTGTCCACAGCTCATGCTGACTATGTCGACCACGAGAGCCAGCAGCGGCCCCAGTCCGCCCGTCCCCCGGTCGAGGCCTGGACAAAGGAGGCCAGAGAGCCCCTCCAGACCAGGTCCACCATGAAGGAGGACTACCGGACCTGGGACGTGGCCCGTCGTCCCCCCATGGTCTACGCAGATGAGCTAGAGAAACCCAAGGGGGCTTTCGCCAACACCACCACCTTCCGCTCAGCATACACGCCCAAGACGGCCCAGCGCGCCTCCAGCTTTAAACCCACCCAGAAGCTGCTGAGCCCCCAGACCATGGATGAAGACTCCATCTATCGCTCCACCTACACACCCAAGGAGATCCCACCTTGTCCAGCCCGGGATGGCTGTCCTCCTGGCTTTGAGTACAGCTCCATGGGGGCTGGAGGACACAGGATGTACCGAACCATCTCGGTACAGGAAACGGGGCTGAGTCAGCTGGCCGCTGCAACGTCTGATAAGCCCTCTTACTCCCACAGCAGAAAGAGCTGCAGGGTCCCCAGCCGAGCCAAGAGGGCGCCATAGAGTCCCGATCAcaaacctgcacacacacagatagctAGAGGGGATTCTTATATTTCTATTCAAATATATTAATAGACATTTTAGATGAATTCATCACGAGCACCTCAGGTATTTTGTATGGTCACTCACATAAAAAAAAGCATAATCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU894255 lncRNA upstream 9064 24705450 ~ 24771803 (+) True G785196
TU894236 lncRNA upstream 126998 24653558 ~ 24653869 (+) True G785182
TU894070 lncRNA upstream 295318 24485101 ~ 24485549 (+) True G785033
TU894083 lncRNA upstream 304803 24475761 ~ 24476064 (+) True G785046
TU894061 lncRNA upstream 328795 24451800 ~ 24452072 (+) True G785026
TU894341 lncRNA downstream 26040 24809714 ~ 24810262 (+) True G785262
TU894502 lncRNA downstream 40943 24824617 ~ 24824840 (+) True G785404
TU894508 lncRNA downstream 44210 24827884 ~ 24828109 (+) True G785410
TU894537 lncRNA downstream 114485 24898159 ~ 25000005 (+) True G785433
TU894789 lncRNA downstream 261750 25045424 ~ 25061013 (+) True G785638
XM_036987645.1 mRNA upstream 10842 24735665 ~ 24770025 (+) False LOC110531798
XM_036987646.1 mRNA upstream 10842 24759582 ~ 24770025 (+) False LOC110531798
XM_036987647.1 mRNA upstream 10842 24759602 ~ 24770025 (+) True LOC110531798
XM_021615216.2 mRNA upstream 35689 24735665 ~ 24745178 (+) False LOC110531798
XM_036987643.1 mRNA upstream 35689 24735665 ~ 24745178 (+) False LOC110531798
XR_005053447.1 mRNA downstream 10939 24794613 ~ 24795514 (+) True LOC110531804
XR_005053213.1 mRNA downstream 11979 24795653 ~ 24800154 (+) True LOC118966018
XM_036987652.1 mRNA downstream 41625 24825299 ~ 24845982 (+) False LOC110531795
XM_036987653.1 mRNA downstream 41625 24825299 ~ 24845982 (+) False LOC110531795
XM_021615222.2 mRNA downstream 48327 24832001 ~ 24845982 (+) False LOC110531795
TU894183 other upstream 197990 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 693541 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 941753 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 976730 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 1001366 23765705 ~ 23779501 (+) True LOC110531760
TU894522 other downstream 146677 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 743999 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 761557 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 929323 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 1174410 25958084 ~ 25958867 (+) True G786218

Expression Profile