RNA id: XM_021615222.2


Basic Information

Item Value
RNA id XM_021615222.2
length 4235
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110531795
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24825299 ~ 24845982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGATTTCTGTTCCAAACAGTAATCATTCCAAAACGGAGTGCGTAGTGTCAGCATCTTTTCGGTCGCACGCCCATCATTCGCGGTTACCATTCCCTTGTCTTCGTCTACATTTACGAATCTTTTGACATGCTTGCTCAGGTTAAATATTACATCACAGATACGCAATTTTTAACCAACTGGGTGGGCAATAATTTTGCTTCAGGATTGTGCGCTACGCGTGTATAATTTTTATTGAGCTCTAATCATCAATCACCTGGCTGTGTTTAATAATCTACAACAATTATTTCCTGCCATCGCAGTAGGTCGGCTGTGTAGCCGCCTCTCCAACATAGCAAAGGATTAAGTTACTGCTGGTGGCGGATTATTTTATTGGCTTCCTCTTGTCACGGTGTAGCTTCAGCCTTTTTATCTTTTCCAATTAAGAGGTTGTCTGAAATCGAGtcatGTCGTTCCGAAGAGGTGTGGTCAGACAGAGCAAGTTCAGGCATGTCTTCGCCCAGGCTTGGAAGGCAGAGCACTGCATCGATGACGTCCGAGTGTCCCGTGTCACATGGGACGGGCCCCTCTGCGCTGTGAACCCCAAATTCACCGCAGTCGTCATCGAATCAGGTGGAGGAGGGGCCTTCCTAGTTCTGCCACTCAACAAGAGTGGCAGAATTGACCAGGCCACACCCACAGTGTGTGGACACGCAGCTCCAGTGCTGGATGTCCAGTGGTGTCCCCATGACGACAACGTCATCGCCAGTGCCTCGGAGGACTGCACTGTAAAGGTGTGGCAAATCCCTGACGGAGGGCTGACTGGACCAATGACAGAGCCCGTGGTGACACTGGAGGGCCACAGTAAACGAGTGGGAATCCTAGCCTGGCACCCGACAGCTTTCAATATCCTCCTAACTGCAGGCTGTGACAACCTGGTGTGCGTGTGGGACGTGGGCACGGGGGAGCTGGTGTACCAGATAGCCGATGCCCACCCAGACCTGATCTACAGTGTGAGCTGGAACCGGGAGGGCAGTGCCATCTGCACCGTGTGCAAGGACAAGGCTCTGCGTGTCATCGACCCGCGACGGGGGACCGTCCTCAAGGTGAAAGAGAAGGTCCATGACGGCACCAGGCCCATGAGGGCCGTGTTCCTCTCCGACGGGAAGATCCTGACCACCGGATTCAGCCGTATGAGCGAGAGGCAGCTAGCCTTGTGGGATACGAGCGATATGTCTGAGCCAATGGCAGTGCAGGAGATGGACACCAGTAATGGCGTTCTCCTCCCCTACTATGACCCTGACACCAACATGGTCTACCTGTGTGGAAAGGGGGACTGCACCATCCGGTACTTTGAGGTGACGGACGAATCGCCCTATGTCCACTTCCTCAGCCTGTACAGCAGTAAAGAGCCCCAGCGAGGAGCAGGCTTTCTCAGCAAGAGGGGCGTGGATGTCAACAAGTGTGAGATTGCCAGgTTCTACAAACTGCACGAAAGGAAAGTAGAGCCCATTTCTATGACGGTACCACGGAAGTCAGACCTGTTCCAGGGGGACCTATACCCGGACACGGCCAGCGTGGAGCCCTCCCTTCTGGCCGAGGACTGGATTGCCGGGCAGGATGCGCCGCCCCTACTGGTCTCTCTGAGCGGTGGCTATGTGGGCGCCCCCTCCAAGAACAGGGACACCCTCCGCAACAAGCCCAAGTTGTCGTCACAGGGCTCCGGGACAGACTCTCCCCCAGTCCCCCAGCAGGCTGCCATGCCCATCGCAACAACCAGGGAGCCGGAGAGcgagggggtgggggtggtgcAGCAGAGGGTCACTCAAGGAGAAGGAGCATCCGATAGGGTGAAAGGAGAGGAGGAAGTGCTGAGCGAGGTGCTAGCGGAGGTGAAGGCCCTACGTTCGGTGGTCTTGGCCCAGGGCCAAAGGATCGAGCTGCTGGAGAGGCAGCTGGCCCGCATCGAGGACGGGGACGTCTGATTGGCAGAGGGGCGTCACCACAACACCCAAAGGGTGTTCTTACTAAAACTCCATAGACCATAGCCTTACTAGAATCAACAACAGTACCTTAAGCTCTGTGCAAGTGGGAGGATGTAGTGAAGTGTAGCTGAGTTACTAAACTGTGGGAATCACAGAGGGGTCGAGAATAAGGTGAACTATTATAGTGAAGGTGTACAGAGACCAATTGGATTCTGCGGGTGAATCTCAATTGTATTTCCTcgtgtcctcctctctcctcgcctcctcaaAACGCGTTGGAGGAAAAGGTCAGAGGTTCTTACCCTCGGACCTTCTCCAATGCATTTTGAGGAGGAGGCGAGTAGAGAGGAGGACACGAGAAAAGAAGGAAACACCATTTAGATGCACCCTACAACTCTTTAGATGCTGATTCAGTTGGATAGTGGGTGATATAGGATGAAGGGGGATAATCTGCATAGGACTTCCATACTGCAGTAAGACATGTTACCGGTTTTTATTAAGGAGCGTTAATGGTGACACTATTTGAAGGTGTATACATTTAAGTATCCAATATTGTGTATCACTACAAAACTGAAGACATGAGGATTCAATTGTAGCCTACTCACGAATCCTTATGCCATGCAGTATGACAACTGGCACAAAGGTCTATGTTAATTTGGCACATTTACAAAATGGCACATCTGTCTACATTATTTTGTATAATATGAATACACCCTCAACAAGTGTTGTCAAGTAGATAGGCAGGTCATTTCCAGTTGCTGCTCTCATTGAAGCACTCACATTGTGAATCCGTTAGGGATCGTTTAATCGGGTAGTTAGAGCTGCTAACCGGGATGCATATCAAACGTCATACATACTGCAGTTTATTATTCGTACTTATACGTTTGTACAAGTATGCATCTATACATTATTTTTCCATTCCATCATAGGAATCTTTTACCCTAGATTAGCTGAAGTGATGAAGTCAGACCATTGGTATTAACAATATAAATCTATATGCTAAAATGGATATATACTGTTTACAAAACTGCACGGGTTAATTGCGATTGGGTAAGTTGTATTAAACTATGCTGTATGGCGCCTATGTCGacatacaaagaaaaaacattggTCCATTTCCAAATAATGTTGATTTTGATGTGGGGATTTTTCTTACAAATGATGTGAAGGACTTGAGTTGGAGGTACCTTAAATGATTGCTATCATGTAATTTTTTGCCTTCGAAGAGAAGGTAACACTACATTTGTGCTCTCCAACTTAAGTTGTCTTAGGTGAATGATCCCCCTTTGGTGAAGCCAAAAGCAGACTGACTAGCAACATGCAGTATAATTTGTCCCAAGGTGTTGTAAACTCCAATGACAGTTTATAACAGAGAGTTCAAGTGAAGTGTTACCTCAGAAAATGTGTTCTCAGTAGAACAAACTTAATATCATACAATTTAAATCATAGCAGTTCTATGACTGTCATGAGGCACAGAACTAAAGAAAGTTGCAATGGAATTTGAGGAGGAGTTTTTTTACTGTGTGAATGATGTATTCCAAGTCAGAACTAAATATAATCGTTTTAGACCAGTggtattcaaactttttttaGCTGGGACTCCATTTTTTCCGCAAGTATTTCTCACGACCCTACCCCGAAAACTAATAACAACCTTCAAATCTGTACATTATGATTTTTACGTGCACAACCATCCGCAATACATTTacccaataaaattgtatttttcaaaTGATCTTTCTCAAAAAGGTTTgtatattgtcccatacaataatctaTAATCTTACccccaaaaaatgtggcaaataatGAATACTGATTTGACGCTGATTTTGAATACCACTGTCTTAGACTGATATAGCAGCAGCTGTGGTTTGTCTTTGAAGATAGGAAAGAAAGGGCATACAATGCTCAACTGTTAGACGGAACTGAAAAAGAATATTCACTgtgttacatttagattttttgcaTTTGTAAGCAGTTTATACTTCACCGTTTTGCAGCCCTCGGGTACAGTTCATATCTAGCCTTATCCCAGATCTGCTTTTGGCTGTATTGTCGACAACGACCACAGGAGTTGGCGAGACGGTACAAAtgggtctgggaccaggctagctcacatcaagctcatcacatgATTAATTTATTTACTAGATTAATATGTATTTATTCACTGTCATACTACACATGTTTTGTGTGGTTGTGAACCAATAGGGGATGAAAATGACACTCCACTGTGCGACTCTTCCAATAAACAGTCCTTCCTCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU894508 lncRNA upstream 3892 24827884 ~ 24828109 (+) True G785410
TU894502 lncRNA upstream 7161 24824617 ~ 24824840 (+) True G785404
TU894263 lncRNA upstream 13997 24773763 ~ 24818004 (+) True G785198
TU894341 lncRNA upstream 21739 24809714 ~ 24810262 (+) True G785262
TU894255 lncRNA upstream 60198 24705450 ~ 24771803 (+) True G785196
TU894537 lncRNA downstream 52177 24898159 ~ 25000005 (+) True G785433
TU894789 lncRNA downstream 199442 25045424 ~ 25061013 (+) True G785638
TU894857 lncRNA downstream 291861 25137843 ~ 25143127 (+) True G785695
TU894958 lncRNA downstream 313330 25159312 ~ 25164194 (+) True G785793
TU894990 lncRNA downstream 336468 25182450 ~ 25182725 (+) True G785825
XR_005053213.1 mRNA upstream 31847 24795653 ~ 24800154 (+) True LOC118966018
XR_005053447.1 mRNA upstream 36487 24794613 ~ 24795514 (+) True LOC110531804
XM_021615224.2 mRNA upstream 48327 24780867 ~ 24783674 (+) True LOC110531796
XM_036987646.1 mRNA upstream 61976 24759582 ~ 24770025 (+) False LOC110531798
XM_021615235.2 mRNA downstream 1676 24847658 ~ 24851652 (+) True si:ch211-119e14.1
trnaa-cgc mRNA downstream 5826 24851808 ~ 24851879 (+) True trnaa-cgc
XM_021615215.2 mRNA downstream 6164 24852146 ~ 24866684 (+) False dtx4a
XM_021615213.2 mRNA downstream 6842 24852824 ~ 24866684 (+) False dtx4a
XM_021615214.2 mRNA downstream 6843 24852825 ~ 24866684 (+) True dtx4a
TU894183 other upstream 249124 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 744675 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 992887 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1027864 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 1052500 23765705 ~ 23779501 (+) True LOC110531760
TU894522 other downstream 84369 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 681691 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 699249 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 867015 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 1112102 25958084 ~ 25958867 (+) True G786218

Expression Profile