RNA id: XM_021615235.2


Basic Information

Item Value
RNA id XM_021615235.2
length 1555
RNA type mRNA
GC content 0.44
exon number 3
gene id si:ch211-119e14.1
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24847658 ~ 24851652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCCTTCTTTAAATTTATGCATCCCCTTATCTAGTCAAAAAAAGTTCCACCACTGACACGCCTGTGAGTTCTTGCTTCCTCTCTGGGTGTCTGTTAATCTTTTTCAAAACCATCCTAAAGCATGTTCATTTAGAGCAAGATATTGATCCAGTAATACATCTATGTATGGATCAGCTGCAGTTGAAAGAAAAGAGCACCCTCAATTTCCAGTAAACTAGATCTCCTTCACGGCAGAGTTTGGCCTTGGATTCCTTCAACTTTTCGGATAACTATTTGAAGAGGCATGAACAACGTATATGACGAAACGACATCCACCAGAAAAGTATTGATCGCCTTCTTCCTCCTGGTCTTCCTTGTTTGCCTCCTGGTCTTCCTGTACATGTGGCTGAACCGCAAGACTAATGGCCAGTACACAGTCCGCCAACTGGTCTATGGGCAGAATGGGGCCAGGGACCGGATCATGGCTGGGGTCAGAGTCCTGGAAGTGCGGCTTGGGCGCCGGCTGTGGCCCCTTGGCGCGGATGAGGAGGCCATAAGAGAGGAGGAACACAAAAATGAAGAGAgggatgtggagagagggagcgagggaagggaaagtgggggggaggaggagggcgatgagagggaagacagaggggATGACTCGTCAGATGACTACTCCAGCATGGAGGGCTGTGACCTGAGGGAGAGAGCAAAGCTCACGGGCGAGAAGGAAGAGATAAGAGAgcgtgaggaggagagagaggagaatatgGAGGAAAAGTGGGAAAGcaaagaggatggagagagtgatgAGGGAGCAGTGGGAGGAGAAAAaagtggaggaggaggtttgCTGATAGACCTGCATCAGTTCTCTGGTAGTGCCATCTGGTCTGAAGATAGGAGTGAGGGGGGCAGAGACAAGGATGATGTGACTGCATTGTGAGGGAAGGATCAGCGAGGGACAATAGTTCCATATTTCATCTTTGTACAGCAATACCGCTTGACAGTAGGTTTGTCGTCATTATCATCATAATTGTAAATTGTAAACCTGACAAACCAGTGTTACAACCAGATTACAACAATCAGAGCAAAGAGCAAcataaataatatgtgtgaaataatAAATCAAAGTGAATAAAGGGACTGACAAGAGCAACAATTGCAGATTGAATACATGAAACAATATTTTTGAGATATTAAAAGCTTTTTTAAAGGTTTCATATGATGAAGCGCAGGCTTTGAGTGGTACTGTTTTCTGCATTAGTCTTATTACTATTGGAATATTTGTGGTGCAGTGTTCTAAagcactgcatatcagtgctagAGGCCTTATTACAGACACTCTGGTTCGATTCTAGGCTGTAACGCAACCAGCTGTGATTAGAAGTGCCATATGGTGGCGCACAATTAGCCTAACGTCATCCGGTTtaggccctcattgtaaataaaacatttgttcttaacagatTTGCctaggttaaaggttaaataaaatttcGAAAAATTAAAAGTGTGTTTTGTATATTTTAGGAATAGCTGTTTGTATTGAAATAAAGGGCCTAATTCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU894508 lncRNA upstream 19549 24827884 ~ 24828109 (+) True G785410
TU894502 lncRNA upstream 22818 24824617 ~ 24824840 (+) True G785404
TU894263 lncRNA upstream 29654 24773763 ~ 24818004 (+) True G785198
TU894341 lncRNA upstream 37396 24809714 ~ 24810262 (+) True G785262
TU894255 lncRNA upstream 75855 24705450 ~ 24771803 (+) True G785196
TU894537 lncRNA downstream 46507 24898159 ~ 25000005 (+) True G785433
TU894789 lncRNA downstream 193772 25045424 ~ 25061013 (+) True G785638
TU894857 lncRNA downstream 286191 25137843 ~ 25143127 (+) True G785695
TU894958 lncRNA downstream 307660 25159312 ~ 25164194 (+) True G785793
TU894990 lncRNA downstream 330798 25182450 ~ 25182725 (+) True G785825
XM_036987652.1 mRNA upstream 1676 24825299 ~ 24845982 (+) False LOC110531795
XM_036987653.1 mRNA upstream 1676 24825299 ~ 24845982 (+) False LOC110531795
XM_021615222.2 mRNA upstream 1676 24832001 ~ 24845982 (+) False LOC110531795
XM_021615223.2 mRNA upstream 1676 24832007 ~ 24845982 (+) True LOC110531795
XR_005053213.1 mRNA upstream 47504 24795653 ~ 24800154 (+) True LOC118966018
trnaa-cgc mRNA downstream 156 24851808 ~ 24851879 (+) True trnaa-cgc
XM_021615215.2 mRNA downstream 494 24852146 ~ 24866684 (+) False dtx4a
XM_021615213.2 mRNA downstream 1172 24852824 ~ 24866684 (+) False dtx4a
XM_021615214.2 mRNA downstream 1173 24852825 ~ 24866684 (+) True dtx4a
XM_021615229.2 mRNA downstream 17439 24869091 ~ 24871866 (+) True LOC110531800
TU894183 other upstream 264781 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 760332 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1008544 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1043521 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 1068157 23765705 ~ 23779501 (+) True LOC110531760
TU894522 other downstream 78699 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 676021 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 693579 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 861345 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 1106432 25958084 ~ 25958867 (+) True G786218

Expression Profile