RNA id: XM_021615214.2



Basic Information


Item Value
RNA id XM_021615214.2
length 4825
RNA type mRNA
GC content 0.51
exon number 8
gene id dtx4a
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24852146 ~ 24866684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACATCAAAACTGATTATGCCACAGAAATGATTTACACGCCATTTTTCTGAATAGAGGCTAAAATGCAAGGAACCTGCTTGTCCCCACCCCCCTGCCTATGAACAACGATTTTAATGATTTATTGATTCGCTTGAACAAAGAAACGAAATATTGTTGCACCTGTACAGAATATCAACATGGAAGGCGTAGGATGTTACTAGCGTCGGCCGTGGTGGTATGGGAATGGCTGAACGAGCACGGGCGCTGGCGGCCTTACAGCCCGGCCGTCTCTCACCACATCGAGGCAGTCATCCGCAACGACCCACGGGGTGGTAGTGTTGTCTTAGGCCAGGTGGACTCTCGCCTCTCGCCCTACATCATCGACTTGCATTCCATGCACCAGTTCCGACAAGATACAGGTACCCTCCGACCGGTGCGTCGCAGCTTCTACGACCCCACGTCGGCGCCGGGCCAGGGCTGGCTGTGGGAGTGGGAGAACGACACAGGCTCGTGGACAGCCTACGACACAGAGGTGGGCATCGCCATCCAGGCAGCACGCGACCGTCAGCAGCCCTGGCTGGACCTGGCGCCACTGGGCTTCTGTTACCTCATCGACTTTCAGAGCATGACCCAGATCAACGGGCAGACGCAGCGCTGCCGCCGCATCCAACGCCGCTCCGACTTGGCCTACCCTCTGGTGTCGGGGCCCCTTCCCAAGACACACCACGCCTGGGGACCCAGCCCTGCAGGACTGCCGGGGGTGGGGGTTTCCGCAGTGGGCATGGGGAACGGGAACGGTAGCGCCTACCCAAGCGGCGCCCTGCCGGCCTCTGCCATCACATCGCTGGGCCAGCCCTGCGCCTGTCAGCAATGCATGCTGGTCCTGAGCGTCAAGGCAGGCGCCATGGCGACGGCTCACACCCTGGGCAGGAGGCCACCTCAGAACAAGCCGCCCAGCCCCAAACTAGGTGGGGGTTACTCGGCCATGGGGGGGTCTTACTCGCTGACTCTCCCTCGCCCCCCCTCCTCCATGGCCAGGTCCTTGTCCCCCCACAGGACGTCCGCGGGCGGGGCTAGCGGTGGTGTAGGGGTCGGCGGCGGCTTCGCCCACTCGCTCTCCCTCCTGGGTTCGGCCACCGCCGCACTCTCCCTCACCTCTACCCGACCCCCTCCCCCGCCTCTACCCCCCCTTCCGCCTCCTCCACCGCCTCCGCCCTCCTCTATCGCGTCCAGTgtcattcttcctctctcctcttccttctccatgGCGTCCTCCGGCCCTCCGTCAATGCCCGCGCCGGCCCCTCTTCTCATCTCCACGGCAGCCTCCTCCTGCACCCCCTCACCCTCCGCCCGTGTCCTGGGGCCCGTGTCTTCAGCAGCGGCGGCCTGTGCAGCCCCCCTGCCACCTCGTGCCAGCCTTGCTGGGCTCAGCCGACCCGCCCTGCAGCGCATCGCCATGGCCCAGTCCAGAGCCCTCATCGCCTCCGGTGTCCCAACGGTTCCTGTGAAGAACCTCAATGGATCTAGCCCTGTCCACCCTGCATTGGCAGGTATTACAGGGATCCTGATGAGCGCCGCAggacttcctgtctgtctgacccGCCCTCCCAAGCTGGTGCTCCACCCCCCGCCCGTTAGCAAGAGTGACATAAAGCCCGTCCCCGGCCTCGGCCACTGCTGCCGCAAGACCACCAAGAAGCAGGCTCGCAAAGGCAAGACCCCTGAGGAAGTAGTGAAGAGGTACCTTCAGAAGGTCCGCAATCCCCCAGAGGAGGACTGCACTATCTGCATGGAGGCCCTGGCTGGGCCCTCGGGATACAAGGGCCCCGGAGTTGGGGGAATCCAGCGGGCAGAGTCGGTTGGTCGCCTGGCTCAATGTGGGCACCAGTACCACCTGCAGTGCTTGGTGGCCATGTACAACAACGGCAACAAGGACGGCAGCCTACAGTGCCCTACCTGCAAGACCATCTACGGCGTGAAGACGGGGAACCAGCCACCCGGCAAGATGGAGTACCACGTCATCCCCCACTCGCTGCCAGGCCACCCTGACTGCAAGACCATCCGCATCATCTACAACATCCCCCCCGGCATCCAGGGGCCTGAGCACCCGAACCCGGGCAAGCCATTCACCGCCCGGGGATTCCCCCGACACTGCTACCTCCCTGATAGCGAGAAGGGACGCAAGGTACTGAAGCTGCTGCTGGTGGCGTGGGACCGCCGGCTCATCTTCTCGGTGGGCACGTCCAGCACCACGGGCGAGTCGGACACGGTCATCTGGAACGAAGTGCACCACAAGACTGAGTTTGGCTCCAACCTAACAGGCCATGGCTACCCCGACCCAGGCCACCTGGACAACGTTCTGGAGGAGCTTAAGGCCCAGGGGATCACAGAGGAGGAGTGCCTACCCAGAGACTGAGCTAAAGATGGGCCAATGGGGAAACAGCAACACAGAGACTTGTTCTGACTCTGGAGACTTGAGACAGAGCTTAAACAATGAACATACAGACTCAGAGCGACACAACGGAACAGAGATGAGAAGAAATAGACAAATgaatatgtaaaaaaataaaaaagagaaaTACAGAAATTAACACAGACAGCGCAAATGTGACAGCAACAGAAACCGAATGCCTGAAAGACTGCATACGAGAAGAAATGACTGAACGGGTGAAAAGATGAGCCAAGAAAAAGAACCAACCATTAAACaaatagagaaacagacaaatCGACTGTCTGACTGTAGTTTCTAGCGACACTGACTGCGGTACAACATCATACACCCTCTGAACAGGTGGGCTGTGGCTTAGCTGCATAGGTCGGGTGTATGATGGAATGTTTTAGTTTATTTCTGCTACATTAATGGTGGCGTCACAAAATGTCATTCAGTGAGACGTTTGAGGCAACAGTGCACATACAATTCAGTGTTGGACAGAAGCTGTTGTTTACACTGTGAGAGTTTGACAAGAATGTACGGAATCTGTATTGGTCCAATTGAATTCAATGGTGAACCAAGTCACCAGAGCTGCTGTAAGTGGTAGGATGAACGCTAAAAATGGGTTTTAGTGGGGTTATGATAGATGGGCTAACGAATGGTAGAGGGCAAAAAAGTATTAGACCACCGGCAGCAGAGTAACAAGTCTCTCATTTACAGAAAACGTTAACGAGAACGTTCAAAATATTTAATGTTATGACTGGATGTGTGAGCATGAATGTGTAATGCCCTCTAGTGGTACTTGTCGAAAAATACATTCCCTTGGCCTCTATAGGTTTTCTTCTGTGTTTTATTAATTGCTGTATCATTTTTGAAAATGCGTTGTTGTACATTTTAAATAGTTGTTATATATTGGCTCGGTTTGAGTTTCATTTCATTTTTACATTCCATTTTCTTTTCACCTGGTTAACCGCTGTATGTTGTCTGTTTGATTGCTACAGCATTGTTTTCTATATGTGACATTGTAAGGAAATGAGTCAGGCTCAACTCTTCCTCGAGAGGGCTCCTAAATATTACAAGCctctgtgggtgtctgtgtgttaaTATCTGAGTTTTTACCTCGGACGATTTAAGACTCGTCCGTTGCCAGGCCCTTTCAGTGTTAGTGTTTTGGGAACCCTCTCGGCGGGGTAGGTGAGCCTAAAAGCACAAAATGAGAGTCCTTTTCAAACCATgtgtgcatctcaatagtcttaCATAGCTTCCTCTCAAATTCTTTCACGTCATTGCAGATGATTGAACAGGGATGGGGGGGTGGGAAAGgcactagactattgagatgcaccccagaAGGAATTAAATCAGATATAAAGCTATGATTGGACCTGCCACGTGAGGTCAGATTTGCACTGCACAGAGCATCATCTTTCTTTAGTCCTTTAGTCAAAAGGAAACATGGAAAGTTAGGCATGGCCTTAAGAAGTTATATCTAACTGTTAAAACTACTTTGGGTTGAATTTTCTTTCTTTTAGACACCAGCTTCATTTGTCTCTGAGAAAAGCGAACCTTCTGCTGTTTTTGCTGTAAGGAGGGACAAAGATTTGCTCTGTCGTCAATCTAACCTGTGGTCAAACGGTCCAGTCGGTTTGTGTTAGGTCCATGACGGACCTGCTTATAAAGCGGTACTATTGACAATATGTTTGAGTATGTGTTAACATGCAAATGTTAGGCCAACATTTATAGTTTATATTTtttctgtatgtatgtgtgtgtttatgtatacaACTTTACATTAAACATTTTGTAAAGGTACGGTTATAACGCAACTCTATACTTAATGAATTTTATTTATTGTGCtctattttttataatttttatcAAATTGTTTTTTTTGTAAGTGGCATATCAAAaccacattatttattttttactttgtatTGTTTAGCCACATTTTAAAGCTGTGTGACTACATGATGTCTACATATCCATCACATGACTGCTGTATTGTACTTTCTGGGTAAGAGTACTGCATTTGGCACATGTTATGTGACCCTGtatccccccctctccccaaTGATACCAGCAGCTGGTTTGGATGTCTTATGCAGGACTTGATGTAGTCATGTTTTATGTCTATTCAGTTCTTGCACTGCTCAGTTTGGCACATGTCATTTTATTTCCCAGGCACAGTTTGACTACATGTCCGTCAATGGGAATAAAACAACGGTTGAAGGCTCATGAccactttgtaaaaaaaaaaaaaacacttttaatAAAACCTTTGTAAAAGTTGTAATGGAGAGAACGAATGACGTTGAGAACTATGATGGCAGAGAAAGTAGTAACGTATAAAACTACAAAAGACTTGCATTTAAAGTAACAGTGGGACAATTAAAATAGCAGTATGATGA

Function


GO: NA

KEGG:

id description
K06058 DTX; deltex

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU894508 lncRNA upstream 24716 24827884 ~ 24828109 (+) True G785410
TU894502 lncRNA upstream 27985 24824617 ~ 24824840 (+) True G785404
TU894263 lncRNA upstream 34821 24773763 ~ 24818004 (+) True G785198
TU894341 lncRNA upstream 42563 24809714 ~ 24810262 (+) True G785262
TU894255 lncRNA upstream 81022 24705450 ~ 24771803 (+) True G785196
TU894537 lncRNA downstream 31475 24898159 ~ 25000005 (+) True G785433
TU894789 lncRNA downstream 178740 25045424 ~ 25061013 (+) True G785638
TU894857 lncRNA downstream 271159 25137843 ~ 25143127 (+) True G785695
TU894958 lncRNA downstream 292628 25159312 ~ 25164194 (+) True G785793
TU894990 lncRNA downstream 315766 25182450 ~ 25182725 (+) True G785825
trnaa-cgc mRNA upstream 946 24851808 ~ 24851879 (+) True trnaa-cgc
XM_021615235.2 mRNA upstream 1173 24847658 ~ 24851652 (+) True si:ch211-119e14.1
XM_036987653.1 mRNA upstream 6843 24825299 ~ 24845982 (+) False LOC110531795
XM_021615229.2 mRNA downstream 2407 24869091 ~ 24871866 (+) True LOC110531800
XM_036987656.1 mRNA downstream 6088 24872772 ~ 24952098 (+) False LOC110531788
XM_036987657.1 mRNA downstream 6092 24872776 ~ 24952098 (+) False LOC110531788
XM_036987655.1 mRNA downstream 6611 24873295 ~ 24952098 (+) False LOC110531788
XM_036987658.1 mRNA downstream 6613 24873297 ~ 24931648 (+) False LOC110531788
TU894183 other upstream 269948 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 765499 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1013711 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1048688 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 1073324 23765705 ~ 23779501 (+) True LOC110531760
TU894522 other downstream 63667 24930351 ~ 24952096 (+) True LOC110531788
TU895266 other downstream 660989 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 678547 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 846313 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 1091400 25958084 ~ 25958867 (+) True G786218

Expression Profile