RNA id: XM_036987656.1


Basic Information

Item Value
RNA id XM_036987656.1
length 5522
RNA type mRNA
GC content 0.54
exon number 18
gene id LOC110531788
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24872772 ~ 24952098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACTTTGACCACAATGCAGTTTGTTTACAAGTAGCGAGTGGCAGGATGCAACAAAGTATCACTTCTCGAGCTGTGTGGTTAATACATCCAGTTAAGATTTAATGTAAGTGTTTATGCAGGATgactaaaacacttcagtgttGGCACTAAAAGATAACATTCCATTGTGACATTAAGGTCCCACGCTCTCCATTTGAAAAATGTCCACATTCAGGATGAGGATGCCGGGACAGAACGACAGGGCACGAAGGCGTCTGAATTTGACCGCCCCTCAGGAAGCCAGAGGGGTCGAGGTCATTCGAGGACGTGTAGGATATGGGTTCACCTTATCAGGACAAGGCCCGTGCCTCTTGAGTGGTATATTGGAGGGGAGCCCTGCAGACCTGCTGGGACTAAAGCAGGGTGATTGTATAGTGAGTGTAAACGGAATCGATGTCGCAAAGGCTTCCCACGAGGCTGTGGTGCAGTTGATTGGCACCTGTAAAGGACCCTTGCGGTTGGTGGTGCTTGTCAGGACCGGGCCCATGGTGGACCCTTCCTCCAGCAAAGAGGAGTTAGCGCTTTCTAGAACAGAGGGAATGGGGGTTTTTCAAAAGGGGGGAGTTTTTCAAACAGTTTTGGACCACTCTGGCAACTCGTCATGTAACTCAGTAAACGCCACTCCATTTAAGCCGAGGCCTTTGTCAGAACCGGACATGTCCCACTGGACCCAACCGTGGAACTCCAAATTCCAACCTGGCTTCCTGTCTGAGGAAGAAACCGTGGCAGACATCGACTCTGTTTTCAATGACCAGGAGAACGATGTGAATCCAGACTGGAGTTTGCTGAACACAGCCATGGTGGTGGGCTACCTGGGCTCTACTGAACTGATCTTGGCTTTGTCCAGCCCCAGCTCAGAGGATGACTGCCTACAGGTAATCCGCAGGTGTATTAGACGTATGGGCATTGAGCAGGAGACCCACACGCTGGTGATGATAAAGGTCATGTTCGACTGTGTCCGCCTCTGTGATGACGCTGGAGCTGTCCTGGCAGCCTTCCCTTCTGAGAACCTTGTCGTGGGAGTTGTGTGTTCCGAGGACAGGCGCTTCTTTTGCCTGGTCACCACTGCACACGTCTCTGGTGGCCATGTGGGGAAGAACGGTCCCCTGAGATCCTCCTGCCATGTCTTTTTCATCGACCCCGAGCTGTGCCACCACAGTGACCACCTGGGCATCGCCGGGCGCTTCGGCTTTGACTGCACCCCAGACACCCAGGGCTGCCAGGCGTTCCCCCTCACACCCCCCTCCGTCCTCCAGTTTGTGTCTGTCTTATACTGTGACATGGGGGAGGCGGTGGAGAGGCTTAGAACCAGGCTGGACAGAGAGTCGGCCCACCACCTCCACACTCGACAGAACAGCAGCAGAGCCTGCAAGAACGGCAGTGCCAGCAGCAACAGAGACAGCGGGATCGGAAACGCTTCCCCCCCTGAGGAGAGACCGGACAGGGATTTCCCAGTTGCCCACGGAACCAACCCCGGGAGCAACCTCCCCAGCTGTCCATGGGAGGATTACCCCCAGGCTGAAGCAAACCTCACCCAAATAGTAGCTCACCAAAATGGCCGCCTAAACTTAAACGGTCATCCTAATCCGGGAAGCACCCATTCCCTTTCTGAATCTCTACCGGGCCCAGCGTCGTTAACCGGCCCATCCGGAGGCCCTCCTCCCAAGTTGGAGTTTCAGTTCAAGCCCCCGCCACCGCCTTACCCTGTGGGTAAGATCCAGAATCTAACAGAAGGAGGAGGACCCTTCAGAAGCAGTCAACGCTGGTTCTCTATGAGCGTCAAGCAGAGGTGGCCTAAGGGCCACGGAGGAGAGCCTGAGCCCCAGGCAACACCGGCCACTAACAGCTGGTCAGGACCAGCCACGGTGGGTTGCACCAATGCCCTGCCACCCCCCAGGAGCCAGATCCCACCAGACAGGTACCAGGCAGCAGAGGCCAGGGAGGAGTGGGCCAAACGACTCTGGAGAGCAGAATCTGGAGAGCTGCTAAATGGAAAGCCCAGGAGAGATGCTAATACCAAGGGCTCCAAGTTCTGGGGCATCGGTACGGGACGCTCCTCTGGCCGTCGCTTCTCGGGCCGTCGCTCATTTGGACACCCCAAGAAGCTCAGCCTGGCACGATCACTGGATGACCTGGAGTCGACTGCTTCCTCAGATGCTGaCTATGGTGGTGGTGTGCAGCTCCAGGGCTGctgcagccagagcagtctgaaCAGCAACAGCAGTCTGCCCGGCGCCGGCAGCCACAAGAGGCTGTCAGAGCGCCGGGTGGCCAGCTGGGCTGCCTGCTTCGAGCGCCTGCTCCAGGACCCCATTGGCGTCTGCTACTTCTCAGAATTCCTCAAAAAGGAATTCAGTGAGGAGAATATCTTGTTCTGGCAGGCCTGTGAATACTTCAGTCAGGTACCTGCAACAGACAAAAAGCAGttaTCCCAGAGGGCGGGGGAGATTTACAACAGCTTCCTGTCCAGTAAGGCTACCACGCCGGTCAACATCGACAGTCAGGCCCACCTGGCTGATGACGTCCTCACATCCCCATGTCCAAACATGTTCAAGGCTCAGCAGTTACAGATCTTCAACCTGATGAAGTTTGACAGCTACTCCCGGTTCCTCAAGTCTGGCCTGTACCAGGAGTGCATGCTGGCCGAGGTGGAGGGACGACCATTACCCGACCCTTACCAGATCCCCTGTAGCCCCGCTCCCTCCAAGCACAGTGCCAGCTCCGGCCACTCCACACCGAATAAGGAGGCCAGGAATCAGAAGTCAGGGAGGTCACTGACCGAGGAACCCGGAGACGAGCACGATGAGCATAAGAAACGGGGCATCTTCTTCTCTTGGTCCCGGAACCGGAGCTTTGGGAAGGGACCCAAGAAAAAGGACATTGGAGAAATCAACATTGATTCCTGGGGCAGCAACGGTCGGAGGGAATCACAGGGTTCCTTGTCCTCGGGTGCTAGTCTGGAGCTGGCCACTTCCTGTTCAACGGGCAAAACCGAGGGGGACAATCGTCACTCGGTGCCGGTGTGGGAGAGGGTAAGGGAGTGCTCCAAGATCTGCAGCATGACCCTGCCGGACGGCTCGTGTTCCTCTGTGACCCTGCGGCCGGGGGCCACCATTAGGGAGGTTCTCCGGGACCTCTGTCAGAGCCTCCGCATCAACATGGCTGCCGTAGACCTCTTCCTGGTGGGAGGAGAGAAGCCTTTGGTGCTGGACCAAGACTGCATGACCCTCAGTGCACGGAACCTCAGAATGGAAAAACGCACTCTATTCAGGTTGGACCTGGTGCCCATTAATCGCTCCGTAGGTTTGAAGGCCAAACCCACCAAACCCGTCACCGAAGTCCTGCGTCCCGTCGTGGCGAAATACGGCCTCCACCTCAAGGATCTGGTGGCCAAAATAAGTGGAGAAACGGAGCCCCTAGACCTGGGGGCGCCCATATCCAGTCTGGACGGCCTGCGTGTGGTATTGGAGAGAGCAGACCCTGTTGCCTCAGGGAAAGACTCTAAGTCCAAGTCAGGCTCCTTGAAAGCACATCCGCCATCATTGACCACCAAGAGTCTTTCTGCAACAGGAGATGACAGGTCATCAGGAAAGGCAAGCGGACCAGATCCGTCGCTCCCTGTGGAAAAGGGAAAGCCGAAAAAGATTAATATAGATGAAGCTGAAGaaTTCTTTGAGCTCCTGAGCCGGGCACAGAGCAACCGGAGAAATGACCAGAGAGGCCTCCTGAACAAAGAGGACCTGGAGTTACCTGACTTCCTGCGGTTAACCTCAGGCCCCCCCTCCACTGCCTCCCTAGACATGGCCTGCTCCACACCCACCTCCATCAAACAAGGCCAGGGGCCTGGCAGGGAGAACGGGGTTGGCGGTGCCCCTGCCCGCGGCCCCCTCAACGCCAGCCTGCGCTCTGAGAGCCTGGACTCCTCCCTCAGCAGCACCAACGGACACCCCCATCCAGCTGCGGGGCGCCGGGCGCTTCTACCCCCAACCCGCCTCCCCGTCCCCCCCTTCAGCGCCGCCCTCTCACCCATCCCCCGCCCCTCGGAGTCTAGAGGCCCGGCCCTCAGGACACTGGAGGAAGACACCCACGCTGACCTGACCCTGGTGGGCGAGGGAGACATCACCAGCCCCAACAGCACCTTGTTGGCCCCTGCGCTGCTGTCCCATGAGGGCAGCCTGCCCGAGGGCAACTTCCTCCCTCCTTCGCCATGCGCCAACTCCTTCCATGATGGTGGTGGGAATGGCCAGTCAAGCTCAGAGAGAAGACAAAGAGCATGTGCTCTTGACCGCTCCCACAAGAGGTCGCCGTGTCTTGGAGCACTCCGCTCTCAGCCAGCACTGCAGGAGGTGATGGACGTGGAGGGAGTGTgcctggaggaagaggaggaggagaaggtgagggaggTCACCATCACCCATGGAGAGGACTCGGAGCTCAGCGTCAGTTTCCAAGGGTACGCGGCTGAGCTCCGGCAGTGCCAGAGTAGAATGAAGACCTCCCAGGTGCCCCTCAACACCCACGATCAATCAGAAGGGAACAAAGACTCCAAGACTGACATATACAAGGCCACCATTGTGTGAGCTCTGAGGCTGACCAACCCTCACCAGCACTTTCCAAGCTTGATTCACGGTCTGTTCAAACAGGAACTTACTTGATGAACAAGGGACTTTCACTGTAAAAAAACTGTCGTTTTTCATGCCAGAACTGATGTATATGTATAATAATTGTATGGTGATAGATATTGTATTATTGATCATCACTGACTATGCCGTACTGTTTAGCGGGTATACATTTTCAAGAAGTGATGAAAAGGAAAATAATTGCCAGTTAAAATGTATGAACAATTTGGTAATAAAGTATTGTTTGGAAATGTATTAGGAGCTACCTTGTTTTAGATGGATGCTGATAATACAGGTACTGTAAAACAGGGGCTATAGAATTAAGCCTCTTTCAGGTAGGTTATAGGATTCACACATGTAGGAACATGAGAAACTCCTTGCAATTCTAGTGCACGTTACTGTATTATTCTGGTcacacactgagtgtaaaaaacatcATGAACACCTGCCATAAtaatagactgaccagatgaatccaggtgaaagctatgatctcttattgacgtcacttgttcaatacatttcaatcagtgtagatgaagtggatgatgcaggttaaagaatgatttttaagccttgagacaattgagacatggattgtgtatgtgtaccattcagagggtggatgggtaagacaaaatatttaagtgcctttgaacagggtatggtagtaggtgccaggtgccaggtttgtgtcaagaactgcaggtgttcttaatattttgcaCACTCAGTGTACACTGTTTCATGGTGAACAAAATATGATGCCTCTTTATGTCTGTACATTTGATCTATTATGGTCTAGCTTGATGTTTGGTTGTTCAAATTCCACTCAATAAACATTCCCACCTTTGTAATGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU894508 lncRNA upstream 44663 24827884 ~ 24828109 (+) True G785410
TU894502 lncRNA upstream 47932 24824617 ~ 24824840 (+) True G785404
TU894263 lncRNA upstream 54768 24773763 ~ 24818004 (+) True G785198
TU894341 lncRNA upstream 62510 24809714 ~ 24810262 (+) True G785262
TU894255 lncRNA upstream 100969 24705450 ~ 24771803 (+) True G785196
TU894789 lncRNA downstream 93326 25045424 ~ 25061013 (+) True G785638
TU894857 lncRNA downstream 185745 25137843 ~ 25143127 (+) True G785695
TU894958 lncRNA downstream 207214 25159312 ~ 25164194 (+) True G785793
TU894990 lncRNA downstream 230352 25182450 ~ 25182725 (+) True G785825
TU895020 lncRNA downstream 250990 25203088 ~ 25203310 (+) True G785851
XM_021615229.2 mRNA upstream 906 24869091 ~ 24871866 (+) True LOC110531800
XM_021615215.2 mRNA upstream 6088 24852146 ~ 24866684 (+) False dtx4a
XM_021615213.2 mRNA upstream 6088 24852824 ~ 24866684 (+) False dtx4a
XM_021615214.2 mRNA upstream 6088 24852825 ~ 24866684 (+) True dtx4a
trnaa-cgc mRNA upstream 20893 24851808 ~ 24851879 (+) True trnaa-cgc
XM_036987659.1 mRNA downstream 728 24952826 ~ 24971460 (+) True LOC110531794
XM_036987660.1 mRNA downstream 19653 24971751 ~ 25017445 (+) False LOC110532977
XM_036987661.1 mRNA downstream 19653 24971751 ~ 25017445 (+) False LOC110532977
XM_036987662.1 mRNA downstream 19653 24971751 ~ 25017445 (+) False LOC110532977
XM_036987664.1 mRNA downstream 19653 24971751 ~ 25017445 (+) True LOC110532977
TU894183 other upstream 289895 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 785446 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1033658 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1068635 23802586 ~ 23804137 (+) True LOC110531761
TU893055 other upstream 1093271 23765705 ~ 23779501 (+) True LOC110531760
TU895266 other downstream 575575 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 593133 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 760899 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 1005986 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 1461014 26413112 ~ 26413532 (+) True G786496

Expression Profile