RNA id: XM_036987662.1


Basic Information

Item Value
RNA id XM_036987662.1
length 3790
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110532977
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 24971751 ~ 25017445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCCCCTCACCAGTAGTCTAAAGCTATTTTGAAAGTGACCCCCCATTCGGGCACGGGACAGCGACACTGCAGCTGTTTGGAACCATGACTGAAGATGACGGATTCGGTTGTCGTGGAAGGATATGTCAAATTCAGAGATGGAAAAAAGTGGAAGACTAGGTGGGTCGTACTTCGCAAGCCATCGCCTGTAGCAGACTGTTTGGTACTTCTCGTCTACAAAGACAAGTCGGATAAAGCCCAGGGCCACCGGGAGAAGGGCAGCATCACCTTGGAGGATATCTGTGGACTGGAGACAGGTCTGTCCTATGAGGGGGTAAACTACACGCTGGCTATCCTCTGCCTGGGCCAGGTTGCTGTGCTGGGCTTCGACGGCAAGGAGGCTCTGCTGGCCTGGGATATCCGTATCCGCTACAGTCTTGGTGAAGTCCATAGGTTTAGCGTTGGCATCTTACCAGGCACCAAGTTGGAGAGTGGGCCTGCGATCCTTCACTTGTGTAACAACCTACTGGTTCTGGCCAGGGACATCCCCCCTGTTATCATCGGCCAGTGGAACCTCCCGGACCTACGCAGATATGGACCCGTACCAAATGGCTTCGTCTTTGAGGGGGGAACGCGCTGCGGCTACTGGGCTGGCGTCTTCTTCCTATCGTCCATGGAGGGAGAGCAGATCAGCTTTCTGTTCGACTGCATCGTCAGGGGCATCTCCCCCACCAGAGGCCCTTTTGGACTGAGGCCAATCCTGCCTGACCCCAACGCCGCCGCCAACCAGGCCTACTCTGAGGAGAGGGTAAACCATGAGGCCCAGGAGCTGGAGAAACGCCTTAGCATGCTGTCTCACCAGAGCAGCACAGCCTCCTCCACGTATGGTCTGTCTGTGGCGGGAGACGACCGCAGCATATCAGGCTCCTCTGACACCTCCGACACCAGCCAATCAGACTCCAGCATCGGCAGCCGGCTGGCCATTTGGACTGAGCCCGTCACAACAAGCTCCGCCCCCACAGAGACCATCATTGGCCAGTCTGGGCCCAAGGTGGCCTTACAGGCCGAGGATAAACTGTCTGTCATTCAGGTGGGTGGAGCTCGTGCAGTAGCCAAGCCACCTCGGTCCCGGCAGCTGCAGGAGATTGGTCGACAGAGCTCATCCGACAGCGGCATCGCCACAGGAAGCCACTCCTCCTACTCTGGGAGTTTCTCCTCCTATGCAGGTAGCCTGGACATTGGTTCTGGGGGGGATGACTTTGGCTCCCTGCTCAGCCTGCCCCCTCACCTGGACCTGGCCCCCTGTACCTGCCCCCCAGCGCCAGGACAGGAGTACCAGGTACCCACGTCACTGAGATACCTCTACGACACCCCCCGGAATCTACTGCAGGGGGGAACAGGAGGGGCCAGGGGGCACCAGACCTCCACAACATCTAAGGACCAGGCGGGTAGTTCACCCCAATCACCCCCATCATGTAAGTCAGTACAGAGGGAAAAAGAGGGTCCTCTCGGGGGTCGCTCGGACACTGTTGCCAGGCGCTCGATGGCTGATCTCTTACAGGGCCACTCAGAGGAGAGTAAGAGCGGGGTGGCGCCCTCTAGTGACACTCAACATCCAGACTCCTATCAGATATGCAGCAGTTCCCAAGCCACTGCCTCCAAAACCCTCCTAACCATCTGCGCCACCTGTGGAGGATTCAAGGGGACTCCACTCTCCTACACTGGGGGCTCAGCAATGCCAGCCGTACCAGACAAGAAGCAGAAGAGTAAGGAGGAGAGGCACAAAGTCGAGTATGAGATCATGGAGAGCCGGGCGTTGGAGAAGAGTTCAGAGGTGGAGCATCAGGAACCAGAAGAGAAAAGCAAGTACGAGCTGATGGGCAGTTGTGGACAACAACGGTTCCTTCATGAGACTGAAGGGGCCATGTTTGTGTTCCCGACAGAAATGGCGGCTCCAGAAAGACCCCGCGGTGATGGAGTGACCTACGTCAATATTCCCATCAGCCCCACGTCCAAGAAACAGCTGAACTACATGGAGCTGGAGCATCAGGAGCAAACTGGGGTCAGGGGGACTGGCCAACACCTCCCAGGACAGAGGAAAAGTTCCACTAAATATGCCCAGATTGACATCACTGCTACGGATGCCGCCCACAAAACGGGTACCCAGCATGCCCTGGGGCGAGAGGAGGGTCTTCGCACCCTggagcagaggaggaggggagtaccACAGTGACATCACACCTCAAATCTTGACCTCCATAGGGCCTCTGGCCCAGACCAGACTGCTGTATAAATCTCTAGAATTCACCAGAAACTTGGATTTCCTGGGGCACCTCCAGCTGCCATGATGTCAAACTCCTCCGAGATCTGCCACATTTGATTTCTCTAACATCAATTGTTGACGTCTTCGGACAGTACTGTCATTCTGCAATCACGAAAGCAACATGAAAACAAACTGTAATTAAAAAGACAAAAGCTGCTGCATGGATTTAAGGGATGTAAAGGGGACATTTCAATCCCTTGTGGAACCAGACATCTCATTAGAAGgcatcactgtcactgtcacagcCCTGGGCAGACTTGGGAGGAGTGGGGGGCTGAAAGTGCCAGTCTTGGAACTGAGTCATTACCCAGGCACAAACCCCCGGAGGAGCAGTGGGTTTTTCACAGCCTCGTCTGTGCCACCCCTAATCTAATACAATACGGTTAGTACCTCGTTtgggggagatgaggagggagttGAAAAAAGCATTACCCTCTAACTCCTCTCTGATTATCGTTATACTAATTCTATAGTGTTTAGTTGTATGAAAGCCTTGATTGAGGCCTTTTGAAAGAGACTAGTTTAGTTTAGCACAGGGCCAGATAGATAATGGATAATCAGTCTATATTTATCCTGTACAGTACATGCAGTCTTACTCATTCAGAATGTCAAAGCTACAGCGACGTTCAACAAACTTTTTAAGAACTTTATGAAGCTAATGCAACAAAGTGGGCATAGACGTTCCGGCGGTGTTTGTATACCAATGAGACCAACGCGATTAAGCCCTCATTATTGGGTTCTGGTGACTCAGCCCAGGCTTGTAATTGTTCCGCGTTGGCTAGATGAACTTTGGTTGGCTTGAGTGTGCCTAATTGCCCGCTGTTGACCACATCCGTAGCGTTCGTTTCTGGGCGCtctccatttgtttttcaactacaCGGTTCACATGGCTTCgctgagggacagacagacagagcttcaGCAACATACACCCTATAAATAATTCATTGGATTTTTTTCAGCTTCGCAGAAAGGAAAAATGAAAAACAATATCCCGGAAATGTTTGTCAGAAGCGCCTGTGGCCCCCCATTATGCAAacatatatcttttttttttttaatagctAGATAATTTAAGACAAGAGTTCCTATGTAAAAGTAACCTTATTGGAATAGACATTTCTTCTTGTCTGTATTCCCTACTGTGTGTTGAACGTATGCGTTTGTTTTGCTGATACTTTAGACAGTCATTATTTTATTTGTGCGGTTCTCATTATATTAGTACATATATCACTTTTTCATATACGCAAATGTAACCTTGTCTAGAGAGAAATATACTTGTATTAAAACCAATATATATTTCTCCGGTATCTGTAAATACATTTCCCTGTTTCTGTTCTAGATGTCCTGGACTGCCATACATGATATATTTGAAGATAATGTGTATGTACAGATCAATGTTAAGAGTTTTACATACGATGCCTGTATTTTTTCAAAAGCCTTTTATTTGAACATTTTATTTATAACAAATAACAACCATTGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU894508 lncRNA upstream 143642 24827884 ~ 24828109 (+) True G785410
TU894502 lncRNA upstream 146911 24824617 ~ 24824840 (+) True G785404
TU894263 lncRNA upstream 153747 24773763 ~ 24818004 (+) True G785198
TU894341 lncRNA upstream 161489 24809714 ~ 24810262 (+) True G785262
TU894255 lncRNA upstream 199948 24705450 ~ 24771803 (+) True G785196
TU894789 lncRNA downstream 27979 25045424 ~ 25061013 (+) True G785638
TU894857 lncRNA downstream 120398 25137843 ~ 25143127 (+) True G785695
TU894958 lncRNA downstream 141867 25159312 ~ 25164194 (+) True G785793
TU894990 lncRNA downstream 165005 25182450 ~ 25182725 (+) True G785825
TU895020 lncRNA downstream 185643 25203088 ~ 25203310 (+) True G785851
XM_036987659.1 mRNA upstream 291 24952826 ~ 24971460 (+) True LOC110531794
XM_036987656.1 mRNA upstream 19653 24872772 ~ 24952098 (+) False LOC110531788
trnaa-ugc-31 mRNA downstream 9126 25026571 ~ 25026641 (+) True trnaa-ugc-31
XM_021615236.2 mRNA downstream 86408 25103853 ~ 25108225 (+) True LOC110531806
XM_021615237.2 mRNA downstream 177336 25194781 ~ 25197585 (+) True LOC110531807
XM_036987668.1 mRNA downstream 297917 25315362 ~ 25324106 (+) False LOC118966019
XM_036987667.1 mRNA downstream 298014 25315459 ~ 25324101 (+) True LOC118966019
TU894522 other upstream 19655 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 388874 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 884425 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1132637 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1167614 23802586 ~ 23804137 (+) True LOC110531761
TU895266 other downstream 510228 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 527786 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 695552 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 940639 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 1395667 26413112 ~ 26413532 (+) True G786496

Expression Profile