RNA id: trnaa-ugc-31



Basic Information


Item Value
RNA id trnaa-ugc-31
length 71
RNA type mRNA
GC content 0.54
exon number 1
gene id trnaa-ugc-31
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25026571 ~ 25026641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtgtggctcagttggtagagcatggtgcttgcaacaccagggttgtgggttcaattcccacaggggatca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU894537 lncRNA upstream 26566 24898159 ~ 25000005 (+) True G785433
TU894508 lncRNA upstream 198462 24827884 ~ 24828109 (+) True G785410
TU894502 lncRNA upstream 201731 24824617 ~ 24824840 (+) True G785404
TU894263 lncRNA upstream 208567 24773763 ~ 24818004 (+) True G785198
TU894341 lncRNA upstream 216309 24809714 ~ 24810262 (+) True G785262
TU894789 lncRNA downstream 18783 25045424 ~ 25061013 (+) True G785638
TU894857 lncRNA downstream 111202 25137843 ~ 25143127 (+) True G785695
TU894958 lncRNA downstream 132671 25159312 ~ 25164194 (+) True G785793
TU894990 lncRNA downstream 155809 25182450 ~ 25182725 (+) True G785825
TU895020 lncRNA downstream 176447 25203088 ~ 25203310 (+) True G785851
XM_036987660.1 mRNA upstream 9126 24971751 ~ 25017445 (+) False LOC110532977
XM_036987661.1 mRNA upstream 9126 24971751 ~ 25017445 (+) False LOC110532977
XM_036987662.1 mRNA upstream 9126 24971751 ~ 25017445 (+) False LOC110532977
XM_036987664.1 mRNA upstream 9126 24971751 ~ 25017445 (+) True LOC110532977
XM_036987659.1 mRNA upstream 55111 24952826 ~ 24971460 (+) True LOC110531794
XM_021615236.2 mRNA downstream 77212 25103853 ~ 25108225 (+) True LOC110531806
XM_021615237.2 mRNA downstream 168140 25194781 ~ 25197585 (+) True LOC110531807
XM_036987668.1 mRNA downstream 288721 25315362 ~ 25324106 (+) False LOC118966019
XM_036987667.1 mRNA downstream 288818 25315459 ~ 25324101 (+) True LOC118966019
XM_021615242.2 mRNA downstream 297358 25323999 ~ 25339758 (+) False LOC110531811
TU894522 other upstream 74475 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 443694 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 939245 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1187457 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1222434 23802586 ~ 23804137 (+) True LOC110531761
TU895266 other downstream 501032 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 518590 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 686356 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 931443 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 1386471 26413112 ~ 26413532 (+) True G786496

Expression Profile