RNA id: XM_021615236.2


Basic Information

Item Value
RNA id XM_021615236.2
length 4373
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC110531806
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25103853 ~ 25108225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGACTGAGACAGCTTTCTGATGTCGCGGAGCACTGAGAGGGAGGCAGCAGCCGATGGAGAAGGGTTGTCTGTCATGCTATAACAGTGTGCATGTACAAGGCAAGGTGGCATCTTCGTTTAGTCAATTAGCCAGATATATGTTTGGTGATTTTCTCTTTGAAGAAGTCTTATTTGGCATCTAATTCAGGAGATGGCATTTAATCCATTCCTTCACCATTGTGTGCATTTTCATTTTGGCAATGTCAATACTGCCTATTTATCTTGGACCTGATATTTTCTGATGGACTCTATATGCATAAAATGACTACTTCTCCTTGAATCGACTATTCTGGAATAACACTAACCACATAGACGGGATGGGATCGTTTAATTCAAGCGGAGTTGACGCGTTCCCAGTTTTcaatttaaattcctcatcagAAAGTCCATATACTTTGGCTACTATAGCGAGTCTTGCAGCACTTGTAAGTTGTCTTATTTTGTTTACAGTGGTCGGTAACGTCCTGGTTGTAATTGCGGTGTTAACAAGCCGGGCACTGAAAGCACCCCAGAACCTGTTTTTGGTTTCCTTAGCCACAGCAGACATTCTGGTCGCCACTTTGGTGATGCCTTTTTCTCTGGCAAACGAACTTATGGGCTATTGGTATTTCGGGAAAGTTTGGTGCGGAATTTACCTTGCTTTAGATGTCTTATTTTGCACTTCGTCCATTGTCCATCTGTGTGCAATCAGTTTGGACCGTTACTGGTCCGTTACGCAAGCTGTTGAATACAATCTCAAACGGACTCCTAAGCGAGTGAAATGTATTATCGTCATTGTATGGCTTATATCTGCGATGATATCTTCTCCTCCGTTAatatcaatagacaagaacaatgATAACTCTCAGTACCCAGGATGTGAGCTGAACAATGACACTTGGTACATCCTTTCCTCTAGCATTGCGTCATTCTTTGCTCCTTGCCTAATCATGATATTAGTATATATTAGAATATACCAAGTGGCCAAGACAAGGACCAGGGGCATGTCGGAGAAAAAACATGGTCCAGGTGAACCTACAATGACTGAGAATGGGTTAAGCAAAGCCACCTCGTGCAAAATCAACGGGGACAAAGAGAACGGGCACTGGCAGTGCCCTTCCACGCCCACCAGCATGAGGACAACAGGGGTCCAAGACGAGGTGGACCTGGAGGAGAGCTCCTCCTCAGAGGGCAAAGGTCACCCCAAACCTCAAGACCTGAACCATAAGAGGGCCAAGAGAGCCAGCCGGAAGAACAGCGCCATCTCCAAACACTCCAGCCGAATCTCCAGAGCCAGCAACAAATCCATGGACCTGTTCGCTtccaggaggaagaagaggaggaggagctctGCGTCCAGGAAAAAGGTATCCCAGGCCAGGGAGAAGAGATTCACCTTTGTGCTGGCGGTGGTCATGGGAGTGTTTGTGGTGTGCTGGTTCCCATTCTTCTTCAGCTACTGCCTGCACGGAGTGTGCGGGGACCCCTGTAAGATCCCCGATCCCCTCTTTAAGTTCTTCTTCTGGATCGGTTACTGTAACAGCTCCCTCAACCCCGCCATCTACACTATCTTCAACCAGGATTTCCGGCGCGCCTTTCAGAAAATCCTTTGCAAGTCTTGGAAAAAATCCTTCTAGATATGTAATAACAAGAGGGACAAGCCAGGACTAAATATCCCTTGAGGTGACAATGTCAATAGCATAAACGTATGAAATTTACCATGGGAATATCAATGTGAAAgcagacattttttttaatttggcCCATGGAACAATGCAATGTGCATACTGTACTTACAGTGGACAGACACATTGTCATGCTGTAACTCAATTGAGTCAGAGCATAATACTGAACTACGTCTTCATATCCCCTCACAGGCAACTCTCTAGTGCTTTTAACCTACTTGTTTCTCTTACCGGCCTTCATATTTTCCATCCACGTTTAGTGTGTGCTTAGTGGTTCCCAGAATTAGATGTACTGAAGTGTGTCGCAAGGCTTTAACTCAATGTCATGTTAGATATCCAGTACTCCTGAGTCCTTTACAAACAAAGTGACAGCAGGTAGCATTTCCAGGTTGATCATGCTAATGCAAAAAACACAGGGGAGCTAGCCTGGCGCATCTGCAGTTTAATCCAAAATACTGCATGTTTTCATGGGTAATGCTTTCCCTACGGATTACAAGTGGTTGAGGTGTTGAGGGGTGACTATACCAGGGctgtccaaccctgttcctggataaCTACCCcttgctttgttttttttgctccaagcccagttgtaactaacctgattcattttttttttaccaacaagctaattattagaatcaggtgtgctacaGTAGATTAGGGTTGAAGCGAAAATCTACatgatggtagctctccaggtacagggttggagaaccctgctctatacattttaaaaatatggGCTACGGTTGGACCTGTTATTAATACATAATAGTAAGAAAGCCTCTTTATTTTTCACCTTGGATGCTGACTAATAAATATTTAAGAATAAAACATAGTGTTTATTTTAATACACTACCTCCCTTGTGGACTGTTTCTGTGTAATTATTTAGCATACTTAGTATTTTGTTTTGCAAGTGGTGCAGTTTCGTATGCTTAAAGTAGTGGGCTGTCATGCAAAATAAACGCTGAAGAAATATTATGTAAGCTCTATTGTAATGTTGGAGTTCTGACATATACACAGTGGAGCACTCTGACAAGGATGGACATGTGCTTTCGCTTGAGTGATTAAGGGATTTGGAGATAGTCTGCACTGCCACCACCAATCACTGTCCAAAGTGCACTCTCTAAGATGTCAGGCAAACCATTTGTCCCTCAGATGGTATTTCAAACAGCATATTTACGTTTTAAACATGTCAAaggaacagctcaaggacaaCCATGCATTTACACAGTCATTTTTATTTATAGACAATCATTTGGGCATTGTCAAATTATTTAAAATTCATGTCAAATATAGTTAGGGAATGCTAAAGGGTAAATTGTTAAAATAGCCCTGCAGAAGCTTCCTGGAAAAATATAATCTGTAGCTACTTAGCTGCCTAAATATTTTCTTCAATGGGAAGCAATTCCATTGTGGCAATCCTGATCAAGACCATCTATCACGTCCGAAATCCCACCCATCCCACTGACTGGCTTGGAGGTGTTCTCACCATGTCTGCGTACCGATTATCCACCCTTCTCCCAAAGTGTGCCCTTGCACACTTCCAGTCATACAGTAGATCTACAATCCATTAGAGGGAGTGTGCGAGGGCACAATTTGGGAGAAGTGTGGAGAATTGGGATGCTACCTATGTTTCCCTTTATCAATCCATAACATTCAGATTAGTATCCTTTGACAAAGGGAATGAAACAAGAAAGTATTCAAGAGTATTGTGACACAGCCTGTTTGTTTTACTAAGTGGCCCCAAAGATCCCTGGTAAGTTTATTGGCAACACTTTCTGAATTTAACTGTGAAATTGATCAAAGCTGCAGTGATGGGTTCAACCAAATGATTTGTCCTCCTGGCAAAGACTGACCATGTCAGTACCagggtgtacagtatgtgacctTTTAGCACAAAATGGTTTGGTGTCACTTGTGGCTGAGAGGAGATAAGCCAATATTCCCCACCGCCTCTTTCATCAGCGAGGTGAAACTGAGTCCAACTAACTCTTGTTGTGGATCTTTACTCCATGTTAAACTGCTTCTGTTTTTGGGGTGCCAATGTAAATGCTCTTTGAAATGGTCTACATCTTTTGTGTTTGTTCCAGTTACCATATGCTGCTGATATAGTGTAATCGTACATGTCAACATGTGTAGACATAGACGTTTCAAGGGTTGCTTTGTTTATTATCAGTAAAACAAAACAGTTACATACAGTAGATGATGTTGATATACTGTAGGCATTTTAAAGGAATTATGTTAGCCCTTTAACATAATTTCCTTTGTAGATTTTCCATTTTGATCAGTCTAGCAGTGTGAGTGCAGTGGACACATGGACTTCCTGTGTAAAGGATGGGTTTCCCCACATAACCACGAGGGAAGCTACTAGGCAACATGCCCATCTATGATGCAGAGGACTGTTACAAGGGAGTACAACCAACAGCATGCACCCAGTTCAGTTCCTGTTTGATCTCTAATGCATTGGAAAACCTGCTTTGTCATTGCATCTCACTCTGTCAAATACAAAAGTGCCATTTAATGTTCCACTGGTGTCAGAGCTCAGAGTAAACAGTTATTCAATCGCTTGCTTTATAAAGGTCAGACAGATTTTTATTTCAACGCCACCCTGCAGGGTTCCTTTGGCAATTTATTGGCATATTTGGGTAGTACTAACATTGTG

Function

GO:

id name namespace
GO:0019229 regulation of vasoconstriction biological_process
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0006940 regulation of smooth muscle contraction biological_process
GO:0030168 platelet activation biological_process
GO:0071875 adrenergic receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004938 alpha2-adrenergic receptor activity molecular_function

KEGG:

id description
K04140 ADRA2C; adrenergic receptor alpha-2C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU894789 lncRNA upstream 42840 25045424 ~ 25061013 (+) True G785638
TU894537 lncRNA upstream 103848 24898159 ~ 25000005 (+) True G785433
TU894508 lncRNA upstream 275744 24827884 ~ 24828109 (+) True G785410
TU894502 lncRNA upstream 279013 24824617 ~ 24824840 (+) True G785404
TU894263 lncRNA upstream 285849 24773763 ~ 24818004 (+) True G785198
TU894857 lncRNA downstream 29618 25137843 ~ 25143127 (+) True G785695
TU894958 lncRNA downstream 51087 25159312 ~ 25164194 (+) True G785793
TU894990 lncRNA downstream 74225 25182450 ~ 25182725 (+) True G785825
TU895020 lncRNA downstream 94863 25203088 ~ 25203310 (+) True G785851
TU895055 lncRNA downstream 119592 25227817 ~ 25228103 (+) True G785886
trnaa-ugc-31 mRNA upstream 77212 25026571 ~ 25026641 (+) True trnaa-ugc-31
XM_036987660.1 mRNA upstream 86408 24971751 ~ 25017445 (+) False LOC110532977
XM_036987661.1 mRNA upstream 86408 24971751 ~ 25017445 (+) False LOC110532977
XM_036987662.1 mRNA upstream 86408 24971751 ~ 25017445 (+) False LOC110532977
XM_036987664.1 mRNA upstream 86408 24971751 ~ 25017445 (+) True LOC110532977
XM_021615237.2 mRNA downstream 86556 25194781 ~ 25197585 (+) True LOC110531807
XM_036987668.1 mRNA downstream 207137 25315362 ~ 25324106 (+) False LOC118966019
XM_036987667.1 mRNA downstream 207234 25315459 ~ 25324101 (+) True LOC118966019
XM_021615242.2 mRNA downstream 215774 25323999 ~ 25339758 (+) False LOC110531811
XR_002474762.2 mRNA downstream 259140 25367365 ~ 25369664 (+) True LOC110531816
TU894522 other upstream 151757 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 520976 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1016527 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1264739 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1299716 23802586 ~ 23804137 (+) True LOC110531761
TU895266 other downstream 419448 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 437006 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 604772 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 849859 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 1304887 26413112 ~ 26413532 (+) True G786496

Expression Profile