RNA id: XM_021615237.2


Basic Information

Item Value
RNA id XM_021615237.2
length 2058
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110531807
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25194781 ~ 25197585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATCTCATCTACCATGCATCCCAGCCCGGGGACACAGCCGTATCTCGGCTTTGATTTGTTCCCTAATTGACCTAAATAAAGCATCTGAGAGACGGGGTCCCGTTCAACCCCTCAATGCAGACTATCACACAGTGTATAGTAGGGGGCTCAAAGCGAGTAATTCTCGTATTTTTCTGGAGTAATCTTGCTCGCTGCCTCCACTGTCCAATCGCAAGAGGCAATTTTTTTGCTTCGAGTGGATCGCGCCATGTAATTTACAGTAGTATATCTACGGATTCACTCACATTCTCGCGCTCTATCTCGAACTCTCATGGATAGCTCGACGGACTTCAAGAGAAAGATTAGGCATAACTAAGACCAAGCAAAAGAGACACACAAGAATGTCTAAACAGCACGTAAATATTTTGTAAGTCATTTATTTATCGGTGACTAGGTGGTTTGAAGACGACAAAAAAATATGCTTGTTAAGGCACCGGAGTCTCAACATCATGGTCCAACGTCAAGAAGCTCGTCATTTTCCATTGAGAATTTACTTCGGTCTACTACCGGGACTACAGACAGGCTCTCTACGACCGAAGATGAGGGGGATTGTAAGGAAACGGGACTCTCTTGCAACCAAGTCGCTGTCATTGAGAGCCGCTGCAACCAAGTGGAGCGTCAAGTGTCTTACTTTGGATTAAACGTCCAACGCCACTGGTGTGGGACATCGCCAAACAAAGCTTGCAGTGATTTACAGAGTCCGCAGTGCCACTCCAGCAACTCCGATGATCCCGGAGGCTCTCTAAAAACCAGCAACCGGGATTCTCCCGCTCTACCGGAGCCGGTGGAAGACAACGACCAACCGGACGAGAGGGCAGAGGGAAGTCTGACAGACGACAAGGATGACGAAACAGGGTCTTCCTGCTTCGCCCGGGAAGACAGTGAAACACCTGATACGAAAGCAGCTTGCAAGAAGAAGACCCGCACCGTGTTCAGCCGGAGTCAGGTTTTCCAGCTGGAGTCCACCTTCGACATGAAACGCTACCTGAGCAGCACTGAGCGGGCGGGGTTAGCCACCTCTCTACAGCTCACCGAGACGCAGGTCAAGATTTGGTTCCAGAACCGCAGGAACAAGTGGAAGAGACAGCTAGCCGCCGACATTGAGGCCACGAGCATCTCGTATTCGGCTCAAAGGATTGTCAGGGTTCCTATTCTGTACCACGAGAACGCAGCACCTGGGACACTGAGCGCAAACCTGGCACAGGTGTCTCCACCCTTCTCGAGTACTGTAAATTATCCCGTCTCCCAATTCACCCACCCCATGTCTTTTATAAGATCACAAATCACAGGCCTTGTGTGAGACACACATTATTGGTGTATTATATGGAATGAACGTATTGGACATGTGGACATGGTAGAGCAGCGTttaccaaactcggtcctggggactccaaggggtgcacgtttagattgttgccctagcactacacagatgattcaaataatcaaagcttgatgattagttgattacttgaatcagttatgtagtgctagggcaaaaaccaaaacgtgcacccattGGACTCCCGAGGTTTCCGCGTTTGGATTCATTGCTGACAGTGACTTTATTGCAAGTCACCAAAATCACAGCCACATTCATAAGGCAACAACACTTTGACCAACCTGTTTAGTCTATAGGCCCCAACGAACTTCTCTATTTTAATTTGCAAGTTGCAATTGCCATGTATTTTCTTGATTTGAGTCTGTGCAAAAATGTGAATCCCTCAAGCCAGACACTATTCTACATTTGGGGATGTTAACTTAAGCATATATCATTAGATGTATATAATTATTTACATGGAAACTGGATGGAATATTGTCAAGGGTTAGTCAAccagtttgtgtgtttgtattatTTTTAAATGACAAAATTTGTAACCTGTAGATAGACTTTTTACGAGCATGGAGTTACGGGGACTGTATTATTTTAAATTTCTTAGGCTATTTAAAGTGGGTTTCATATGACATTTTGTACACGAGTTGTCCGATcaatgtaaataaaaatgtatgaagTGCA

Function

GO: NA

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU894990 lncRNA upstream 12056 25182450 ~ 25182725 (+) True G785825
TU894958 lncRNA upstream 30587 25159312 ~ 25164194 (+) True G785793
TU894857 lncRNA upstream 51654 25137843 ~ 25143127 (+) True G785695
TU894789 lncRNA upstream 133768 25045424 ~ 25061013 (+) True G785638
TU894537 lncRNA upstream 194776 24898159 ~ 25000005 (+) True G785433
TU895020 lncRNA downstream 5503 25203088 ~ 25203310 (+) True G785851
TU895055 lncRNA downstream 30232 25227817 ~ 25228103 (+) True G785886
TU895100 lncRNA downstream 71839 25269424 ~ 25269644 (+) False G785930
TU895102 lncRNA downstream 71839 25269424 ~ 25269834 (+) True G785930
TU895107 lncRNA downstream 77820 25275405 ~ 25275691 (+) True G785934
XM_021615236.2 mRNA upstream 86556 25103853 ~ 25108225 (+) True LOC110531806
trnaa-ugc-31 mRNA upstream 168140 25026571 ~ 25026641 (+) True trnaa-ugc-31
XM_036987660.1 mRNA upstream 177336 24971751 ~ 25017445 (+) False LOC110532977
XM_036987668.1 mRNA downstream 117777 25315362 ~ 25324106 (+) False LOC118966019
XM_036987667.1 mRNA downstream 117874 25315459 ~ 25324101 (+) True LOC118966019
XM_021615242.2 mRNA downstream 126414 25323999 ~ 25339758 (+) False LOC110531811
XR_002474762.2 mRNA downstream 169780 25367365 ~ 25369664 (+) True LOC110531816
LOC110533008 mRNA downstream 198694 25396279 ~ 25397954 (+) True LOC110533008
TU894522 other upstream 242685 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 611904 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1107455 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1355667 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1390644 23802586 ~ 23804137 (+) True LOC110531761
TU895266 other downstream 330088 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 347646 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 515412 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 760499 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 1215527 26413112 ~ 26413532 (+) True G786496

Expression Profile