RNA id: XR_005053214.1


Basic Information

Item Value
RNA id XR_005053214.1
length 2844
RNA type mRNA
GC content 0.46
exon number 12
gene id trmt44
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25294038 ~ 25309252 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCATCAACGAGCGACAAAATCCATTGAACGTAAAAGTTCCCGGAAGTAATTTTGGTAAACACACGTTTGCATTTTGTTATGCTGTTGTGGCATGCAAGTTACCCTTTTCTAAACTATGCCGAAACTCTTTGCGATAAAATTTACAGAACAATCTAATACGGGAGGATTTTGGTCTGCCATTGATGTTTGGATAAAGAAACCACACGTTGTGAACAAACGTCTTTGTGGTGTCAAAGAGACACAGAGTAAGAATGTTGGCTGTGAAGAACTGAGAAACATCCTGCTAACTCATGGAAGTGATACTTCAGAGTCCAAGGATGTTCTTACCTTCTTGAATAGTGGCGTTGAACTCGAACATGACCAGGAGAGACTGTGGTCTTTTTGTGTGAGGACATTCATTCCTAAAGTAAACTGTTATGGCACAACTGTACATAAAGATATTATACTCAAAGACTTTAACACTCAAAGAGTAAGCTTCTTACCAGTTGAAGAGAGTGAGGAAGGGACTGCCTCTTTACGGAAGAACAACATCTATCAGATACATCTCCTGGCTGAGAAGAGTGATGAATGGACACTAGAGTTACATCTCATGCGGCCTGATAACTGGTTCAGTGACGGGGTGGCCTACCCCAAACTGCCCTGGCTCAGTGGGGAGCTCCTGCCCAAACTGGTGCGCTGGGCCACGGAGAGTAAGACCAGTGAGTTCAAGAGCACCCTGTCTCTCCTGCCAGTAGAGAAGTACAGCATCATGTACCAACGGCTGAAAGACAAGTACAAGGAGATGGTCAAGGTATGGCCTGAAGTGACGGATCCAGAGAAGTTTGTCTTTGAAGATGTTGCCATCGCTACCTATCTTTTGGTCCTATGGGGTGAGGAGCGAGCGGTGAAGGGTCTGACCGTCAAACAGTCCTTTGTGGATCTTGGTTGTGGAAATGGTCTCCTGGTTCACATTCTAAGCAACGAAGGGCACCCTGGAAAGGGCATTGATGTGAGGAAAAGGAAGATCTGGGATATGTACGGCCCCCAAACACATCTAGAGGAAACGGCAATCACTCCCGGTGATGGCTTCTTATTCCCGGGCACAGACTGGCTGATTGGAAACCACTCGGACGAGCTCACACCGTGGATCCCCGTTATAGCGGCCAGGTCATCCTTCTCCTGCCGGTATTTTGTCCTGCCGTGCTGCTTCTTTGACTTCTATGGGAAGTACCAGCGGAGACACTGTAAGAAGTCCCAGTATAAGGAATACATTGACTTCATCTCTGAGGTCAGCACAGCCTGTGGGTTCAACACAGAGGAGGACTGCCTGAGAATCCCCTCCACAAAGCGGGTGTGTCTGGTAGGAAAGTCGAGGAGCTACCAGCTGTCGGATGAGCCGcaggcagaggaggggagagacaagTATATACAGGGTCGTCAGCCCTGCTCCGGGGTCACAGTTCGAGAGTCAAATGTCGAGGATGAAGCCGAGCACCACCACGACCACTCAGAGACTGACAGGATCCACGGCACCAACTGGGGAGCTGGATTCCAGCCCCGAGAGAGGATCGAGACAGTGCGGAACTGTGCCGCCCTTCCCCGGGACTTTGTAGATGGTATAGTCCTACGTGTGGCCACCTCTCTGCTGGGGTTGACCAAGGACGAAGGTGGGGATGTCCCCGGCACCTGGAACATGGGAGgcagGCTGTCCGTGAGAGAGGTGGCTGAGTTGTTGGAGCAGGAGACTCTGCAGGTCCTGAAGAAAGAATGTGGCGGTCTGCAGACCCTGCTCAAGAACAACCACCAGGTATTCAGAGTGGAAGGTGGTATGGTCCATATCCGGGACTGGCGGGTACAGGCCCATAGGCCTAGAGGGCTGCAGGGTACCAGGGCTGATTCTAAGCGGAAGCACCTAATCTCTGGTGCCCTGAAGACCCGGGCCTGCTGGTTCCACGTCCACCACCCTCACGGATGCCCACTGCAGGCCGAGGAGTGTGCCTTCGCCCATGGCCCAGACGATCTCCGACCTTCCACCAGACCACTCAAGAAAATGAAGTACTCCAACTGAACACGCAATTCAGTTTGGACCATTATTGCAATGTTTTATTTCAattgtacaatttttttttTAGCTGTGACTGTCAGTCATACATACAGTGCGGcccaaaattattgacaccctttgATAAGGATAATTGAAATACCCAGCTATATTGTAAGTGAAAAAAATGaggaaagagattttgtttagcAGTAATACTTTATTTTCTCAAACGGTAGGGGTTGAAATGTTTGACATCTCTAAAGATTCttataaataaagtagtcaaaagttgagtatttggtcccataatcctagcacgcaatgactacatcaagcttgtgactctacaaacgtgTTGGATGCGTTTACAGttcgttttggttgtgtttcagattattttgtgcccaatagaaatgaatgttaAATAAtgcattgtgtcattttggagtcacttttattgtaaataagaatcgaatatgggaccaaatactaaaccttTGACTACTTTATTGATAAGAATCTTTTTTATCCGAGCAATTGTATtagaataaaataatataatttcccattTTTGGGGGATAAAATACAGCTCAGTATTTTAATAGATTCTTTTTCcacagtcattattgctcatctttatcagcaggtgtcaataatttcagaccccactgtacatacatacttgCGCTTGTAACTAAATCCGCATATCGAAATTTTGAGACCTAAGTCTGGTTAGATAAGTACATTTGAGTTTTTAGTAGTGGAGCTACTCTGCTATTTGGTTTGCAGATCTCAAATATAACATCTCAAATATAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896564 lncRNA downstream 9666 25284092 ~ 25284372 (-) True G787203
TU896551 lncRNA downstream 24390 25269295 ~ 25269648 (-) True G787190
TU895063 lncRNA downstream 62527 25231266 ~ 25231511 (-) True G785894
TU895040 lncRNA downstream 78805 25215015 ~ 25215233 (-) True G785871
TU895039 lncRNA downstream 80684 25212729 ~ 25213354 (-) True G785870
TU896585 lncRNA upstream 2639 25311891 ~ 25312166 (-) True G787221
TU896587 lncRNA upstream 6247 25315499 ~ 25315941 (-) True G787223
TU896592 lncRNA upstream 10494 25319746 ~ 25320065 (-) True G787228
TU896593 lncRNA upstream 11082 25320334 ~ 25320595 (-) True G787229
TU896594 lncRNA upstream 11359 25320611 ~ 25321253 (-) True G787230
XM_021615240.2 mRNA downstream 26752 25262765 ~ 25267286 (-) True LOC110531809
XM_021615238.2 mRNA downstream 31839 25244197 ~ 25262199 (-) True LOC110531808
XM_036987649.1 mRNA downstream 474614 24803554 ~ 24819424 (-) True LOC110532976
XM_036987650.1 mRNA downstream 474956 24803312 ~ 24819082 (-) False LOC110532976
XM_036987648.1 mRNA downstream 501846 24783891 ~ 24792192 (-) True LOC110531801
XM_021615248.2 mRNA upstream 29329 25338581 ~ 25345140 (-) False LOC110531812
XM_036987665.1 mRNA upstream 29329 25338581 ~ 25365749 (-) False LOC110531812
XM_021615243.2 mRNA upstream 46108 25355360 ~ 25365576 (-) False LOC110531812
XM_021615244.2 mRNA upstream 46108 25355360 ~ 25365576 (-) False LOC110531812
XM_021615245.2 mRNA upstream 46108 25355360 ~ 25365576 (-) False LOC110531812
TU896572 other downstream 2567 25290915 ~ 25291471 (-) True G787211
TU894726 other downstream 328764 24963072 ~ 24965274 (-) True G785578
TU894414 other downstream 674985 24605485 ~ 24619053 (-) False G785329
TU893822 other downstream 1085383 24206453 ~ 24208655 (-) False LOC110531775
TU896529 other upstream 46102 25355354 ~ 25357816 (-) True LOC110531812
TU896757 other upstream 212786 25522038 ~ 25523512 (-) False G787386
TU896721 other upstream 566183 25875435 ~ 25894404 (-) True G787350
TU896702 other upstream 573484 25882736 ~ 25930052 (-) True G787331
TU896717 other upstream 616112 25925364 ~ 25955174 (-) True G787346

Expression Profile