RNA id: TU896576


Basic Information

Item Value
RNA id TU896576
length 1577
RNA type TUCP
GC content 0.47
exon number 5
gene id trmt44
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25294038 ~ 25309252 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTGATGTGTAATTTCGGTCACTTTCCTCCCACTTTAGGTCATCCTTCTCCTGCCGGTATTTTGTCCTGCCGTGCTGCTTCTTTGACTTCTATGGGAAGTACCAGCGGAGACACTGTAAGAAGTCCCAGTATAAGGAATACATTGACTTCATCTCTGAGGTCAGCACAGCCTGTGGGTTCAACACAGAGGAGGACTGCCTGAGAATCCCCTCCACAAAGCGGGTGTGTCTGGTAGGAAAGTCGAGGAGCTACCAGCTGTCGGATGAGCCGcaggcagaggaggggagagacaagTATATACAGGGTCGTCAGCCCTGCTCCGGGGTCACAGTTCGAGAGTCAAATGTCGAGGATGAAGCCGAGCACCACCACGACCACTCAGAGACTGACAGGATCCACGGCACCAACTGGGGAGCTGGATTCCAGCCCCGAGAGAGGATCGAGACAGTGCGGAACTGTGCCGCCCTTCCCCGGGACTTTGTAGATGGTATAGTCCTACGTGTGGCCACCTCTCTGCTGGGGTTGACCAAGGACGAAGGTGGGGATGTCCCCGGCACCTGGAACATGGGAGgcagGCTGTCCGTGAGAGAGGTGGCTGAGTTGTTGGAGCAGGAGACTCTGCAGGTCCTGAAGAAAGAATGTGGCGGTCTGCAGACCCTGCTCAAGAACAACCACCAGGTATTCAGAGTGGAAGGTGGTATGGTCCATATCCGGGACTGGCGGGTACAGGCCCATAGGCCTAGAGGGCTGCAGGGTACCAGGGCTGATTCTAAGCGGAAGCACCTAATCTCTGGTGCCCTGAAGACCCGGGCCTGCTGGTTCCACGTCCACCACCCTCACGGATGCCCACTGCAGGCCGAGGAGTGTGCCTTCGCCCATGGCCCAGACGATCTCCGACCTTCCACCAGACCACTCAAGAAAATGAAGTACTCCAACTGAACACGCAATTCAGTTTGGACCATTATTGCAATGTTTTATTTCAattgtacaattttttttttagtaTATTTTTTTTAGATGTGGAGTTGATGCTACAAGAATAGCTGTGACTGTCAGTCATACATACAGTGCGGcccaaaattattgacaccctttgATAAGGATAATTGAAATACCCAGCTATATTGTAAGTGAAAAAAATGaggaaagagattttgtttagcAGTAATACTTTATTTTCTCAAACGGTAGGGGTTGAAATGTTTGACATCTCTAAAGATTCttataaataaagtagtcaaaagttgagtatttggtcccataatcctagcacgcaatgactacatcaagcttgtgactctacaaacgtgTTGGATGCGTTTACAgttaAATAAtgcattgtgtcattttggagtcacttttattgtaaataagaatcgaatatgggaccaaatactaaaccttTGACTACTTTATTGATAAGAATCTTTTTTATCCGAGCAATTGTATtagaataaaataatataatttcccattTTTGGGGGATAAAATACAGCTCAGTATTTTAATAGATTCTTTTTCcacagtcattattgctcatctttatcagcaggtgtcaataatttcagaccccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896564 lncRNA downstream 9817 25284092 ~ 25284372 (-) True G787203
TU896551 lncRNA downstream 24541 25269295 ~ 25269648 (-) True G787190
TU895063 lncRNA downstream 62678 25231266 ~ 25231511 (-) True G785894
TU895040 lncRNA downstream 78956 25215015 ~ 25215233 (-) True G785871
TU895039 lncRNA downstream 80835 25212729 ~ 25213354 (-) True G785870
TU896585 lncRNA upstream 8200 25311891 ~ 25312166 (-) True G787221
TU896587 lncRNA upstream 11808 25315499 ~ 25315941 (-) True G787223
TU896592 lncRNA upstream 16055 25319746 ~ 25320065 (-) True G787228
TU896593 lncRNA upstream 16643 25320334 ~ 25320595 (-) True G787229
TU896594 lncRNA upstream 16920 25320611 ~ 25321253 (-) True G787230
XM_021615240.2 mRNA downstream 26903 25262765 ~ 25267286 (-) True LOC110531809
XM_021615238.2 mRNA downstream 31990 25244197 ~ 25262199 (-) True LOC110531808
XM_036987649.1 mRNA downstream 474765 24803554 ~ 24819424 (-) True LOC110532976
XM_036987650.1 mRNA downstream 475107 24803312 ~ 24819082 (-) False LOC110532976
XM_036987648.1 mRNA downstream 501997 24783891 ~ 24792192 (-) True LOC110531801
XM_021615248.2 mRNA upstream 34890 25338581 ~ 25345140 (-) False LOC110531812
XM_036987665.1 mRNA upstream 34890 25338581 ~ 25365749 (-) False LOC110531812
XM_021615243.2 mRNA upstream 51669 25355360 ~ 25365576 (-) False LOC110531812
XM_021615244.2 mRNA upstream 51669 25355360 ~ 25365576 (-) False LOC110531812
XM_021615245.2 mRNA upstream 51669 25355360 ~ 25365576 (-) False LOC110531812
TU896572 other downstream 2718 25290915 ~ 25291471 (-) True G787211
TU894726 other downstream 328915 24963072 ~ 24965274 (-) True G785578
TU894414 other downstream 675136 24605485 ~ 24619053 (-) False G785329
TU893822 other downstream 1085534 24206453 ~ 24208655 (-) False LOC110531775
TU893823 other downstream 1085534 24206652 ~ 24208655 (-) True LOC110531775
TU896529 other upstream 51663 25355354 ~ 25357816 (-) True LOC110531812
TU896757 other upstream 218347 25522038 ~ 25523512 (-) False G787386
TU896721 other upstream 571744 25875435 ~ 25894404 (-) True G787350
TU896702 other upstream 579045 25882736 ~ 25930052 (-) True G787331
TU896717 other upstream 621673 25925364 ~ 25955174 (-) True G787346

Expression Profile