RNA id: XM_036987668.1



Basic Information


Item Value
RNA id XM_036987668.1
length 797
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC118966019
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25315362 ~ 25324106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGTGGCTAGGCAATTGTTGCACAGGTGGAAATTGAAAAGGGGTGGAGTGAAAATACTAGGAAGAGGCGGATAGAGCAATGTGGACAGTTTGCCTAGTGCTGTGGTGACCCACAGGGTCATGCTGATGGAACAGGACACTCAGTGGCTGTACCACCTCCTGGCCGAGGTCCAGTTGGAGAGGTTTTACCTGCGTGTCCGGGACAGCCTCAACATCACCCGCGTAGAGCATTTCGCCTACGTTAAAGAGTCTGACCTCGAACAGATTGGTATCAGCAAACCAGGACAGAGAAGATTATGGGAGGCTGTGAAAAACTTCAAGATCAGCGTGAGGCCCAAATCGTGGATGGCCAAGGCAAGACCTTTacatggggctcccgagtggcgcagtggtctcagGCACTGCGTctcaccctggttcgaatccaggttgtatcacaaccggctgtaattgggagtcctatagggcagagcacaattggcccagtgtcgtctgggtttggctggtgtaggccgtcattgtaaataagaatttgatcttaactgacttgcctagttaaagaaaggttaaaCATCTCTCAAGTCCCTCCAGAATGCAATTTACTATTATATACCATTTGTTACAAGGTAGTGGTGAGTTCTTTGAAATAAGTACCAGACATTACTGATTGACACAACATAATAATTGGAATGCTCACCTGTCACTCATGTTGATCTGTTGGTCCCCCAGGCTATCAGTGGGTGTGGTCCGGAGGGGGGTGATCAATGGGGCAGCGTGGGGTCGGGCCAGGAGAAAGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU895125 lncRNA upstream 20268 25294064 ~ 25295094 (+) True G785950
TU895123 lncRNA upstream 22543 25292533 ~ 25292819 (+) True G785949
TU895113 lncRNA upstream 31329 25283766 ~ 25284033 (+) True G785940
TU895107 lncRNA upstream 39671 25275405 ~ 25275691 (+) True G785934
TU895102 lncRNA upstream 45528 25269424 ~ 25269834 (+) True G785930
TU895158 lncRNA downstream 12576 25336682 ~ 25337368 (+) True LOC110531811
TU895196 lncRNA downstream 84497 25408603 ~ 25410380 (+) True LOC110531817
TU895249 lncRNA downstream 162306 25486412 ~ 25486645 (+) True G786068
TU895276 lncRNA downstream 213418 25537524 ~ 25543652 (+) True G786089
TU895280 lncRNA downstream 223066 25547172 ~ 25547776 (+) True LOC118966182
XM_021615237.2 mRNA upstream 117777 25194781 ~ 25197585 (+) True LOC110531807
XM_021615236.2 mRNA upstream 207137 25103853 ~ 25108225 (+) True LOC110531806
trnaa-ugc-31 mRNA upstream 288721 25026571 ~ 25026641 (+) True trnaa-ugc-31
XM_036987661.1 mRNA upstream 297917 24971751 ~ 25017445 (+) False LOC110532977
XR_002474762.2 mRNA downstream 43259 25367365 ~ 25369664 (+) True LOC110531816
LOC110533008 mRNA downstream 72173 25396279 ~ 25397954 (+) True LOC110533008
XM_036987669.1 mRNA downstream 75403 25399509 ~ 25410386 (+) False LOC110531817
XR_005053215.1 mRNA downstream 75427 25399533 ~ 25409216 (+) False LOC110531817
XM_021615249.2 mRNA downstream 75430 25399536 ~ 25410386 (+) False LOC110531817
TU894522 other upstream 363266 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 732485 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1228036 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1476248 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1511225 23802586 ~ 23804137 (+) True LOC110531761
TU895266 other downstream 203567 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 221125 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 388891 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 633978 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 1089006 26413112 ~ 26413532 (+) True G786496

Expression Profile