RNA id: XM_021615245.2


Basic Information

Item Value
RNA id XM_021615245.2
length 3218
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110531812
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25338581 ~ 25365749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TagttagctctggtccagggctaCATCGTAGCAGCTGTCGGAAGAGCGTCGCCATAACGTTGAACTTTACAGTGCGCATTAATACAGATGTGCACTTCCAGAAAATATTATTGGCTGCTGAAAGTTGTCGGGCCGTTCACAGTGTCATTTCTATCACATATAAGTATTTGCCTATATTTAACTACCCTCTTGGCTTAAATTCCGTAAACCGGTGTATCCACAATTAGATAAATCTTGTGACAGCCAGTAAAGGGGCGGAGATTATGCACAAACTACACCGAAATGACAGCAACGCTTGTAGTTTTCGTATGATACAAAGACAAGTTGTTTAGCCGATCGTTAattttacgcctgctacgttagttTACTGATAGGCAAATAAGACCGTCAAAGCAAGTAGGATTCTTCACGTTCTCCTCGGTTCTTCTGGTCAAGAACCACCAAACAACAAGCAATTCCTTTTTGGTTTAAGGAAAGGCTATTCAAGAATATTTACCCATCCCCATTGAATGATGACAGTGAGacaccaatgcaAGAACcgctgggtctggtctacttagttcatTGACATTCATTGAACCAGAAAACAACAACGAGTGGGTTGTCGCTTCCTCTTCTGTCTCAGAGACTACGGCAGTGGACAAGAGAGGAAGTCCTCCTGCTATCCACTGTGCGTCCACTAACTAAGTGATCATGTCAGCCCCAGGTTACCCATCCCCTCACCAGGGTCCTGGAAGTTACTCCACGGCACCCTACCCTGTTCCTCATGGTGGGTATGGTGAGCCTAACCATGCTCCCCCACCGGTTGGCTTCCATATGGGCTACAACCAACAACAACCCCACCCAGGCCAGCCTGTGATGTACCAGCCTGTGCCCATGCCCGAATATGGGGTACCTCAAATGGGCCCCAGCCCAGGCTATGGTGGTCCCATGCCTGGGCCCGAGTACGGTGCACCTCAGATGGGCCCCAGCCCAGGCTATGGTGGTCCCATGCCTGTGCCCAGATACGGTGCACCTCAGATGGGCCCCAGCCCAGGGTATGGTGGTCCCATGCCTGGGCCTGAATTCGGTGCACCTAACTCGGGCCCTCCTGCAGCCATCTCCCCAGCCCCTGCAGCAGTTGTGCCTATTGGAGTTCCACCTGGCCTGGAGTACCTAACACAGattgACCAGATCCTTATACACCAAAAAGTGGAGTTGCTGGAAGCGTTCATTGGCTTTGAGACCAACAACCAGTACGAGATCAAGAACAGCCTGGGTCAGAAGATCTACAAGGCCAAGGAGAAGAACGACTGCTGCACACGCAACTGCTGCGGCGCCCTGCGTAGCTTCGACATGAAGATCAAGGACAACATGGACCGCGAGGTCATCCGCCTCGTACGACCCTTCCGCTGTGCCTCCTGCTGGTGCCCCTGCTGCCTGCAAGAGCTCGAGGTCCAAGCCCCGCCTGGCACCACCATAGGCTATGTGTCCCAGGACTGGAACCCCTGCGTGCCGAAGTTCTCCATCAAGGGGGCCAACAAGGAGACCGTAATGAAGCTGGAGGGACCCTGCTTCGCCTGCAACTGCTGCGGGGACGTCAACTTCAAGCTGACGGGGAAAGATGGAGGCAAGCCCATCGGCCGCATCAGTAAGCAGTGGAGTGGCCTGATAAAGGAGGTCTTCACCGACACGGACAACTTTGGCATCCAGTTCCCCATGGACCTGGATGTCAAGATGAAGGCTGTGCTCATGGGCACCTGTTTCCTCATCGATTTCATGTTCTTCGAGAAGGTTGGCAACACAAAGCAGCGCAACACCGTCTTCTCATAACGTaggaaaagaaagaaagactGAGCCCTTGAGGCAATGCAGTCTGTTTTTCCGATCCCGTTCGGAACCTCCATTTTTTTCCAGAATCTATAAGAAACTCCTTCCTTATTCAAAAGCTTAGAGGACACTGCCAATCCCAGAACTCTTTGTGTGAAACACAACATGAGGCCTTATCTGATGATGAGCTTACATTTGAGCCAAAATGCCCTCTCTGGACTGTTTCTGTGTATCCATCCAAATGTAAGAATCAGCAACTGGGCTATGAGACATAGGCCTTAGTTCTCTTTAATGGGTTTCTCCACTCTCTGCATGGAATGTGTTTATCTCTATTTTCTATTTGTTTTCTATAACATTGATGTGGGGTTCAGAACAGTAGGCTTAATGGAAAAATACCAGTTATATATTAACCTAACTTTACATATTCTTTGAGATTTCTGTTTTGTCTGTGTGCAATGGTATATTTTACATCATGTTATTTGTAAGCCAAATGTATATGTTAATCTATCTATACTTCACCAGCCATGAAATTATTACTGTAGAAATCTAGGTAATTTCATGATTAGTCTAGTACTTTTAAAGAGATTATAGGATTAACACTTgcaatacactactatactaaCTGTAGCAGCTGTGGTTGTACTAGCTGCTTTGTTAGATTTTCGTAAGATGACCacgtacactaccattcaaaagtttggggtcacttagatatgtccttgtttttaaaagaaaagccattttttttgtccattttaaaatagcatcaaatggatccgaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaatggcagaattgtaatggaatatctacataggtgtacagaggcccatttaccagcaaccatccctcctgttttccaatggcacgttgcgttagctaatccaagttgataattttaaaaggctaattgatcattagaacacccttttgcaattatcttagcacagctgaaaactgttgtgctgatttaaggaagcaatacaactggccttctttagactagttgagtatctggagcgtcagcatttgtcggttcgattacaggctcaaaagggacagaaacaaagaactttcttctgaaactcaccAGTCTGTtgctttgaacggtagtgtacataatCATACAAACAAAGTACACCTGTATTATGAATTATGGTGAAAACTAGAGTAGTTTGAAGGACCATTAATGGGAGAAGACTAATTCTGACTTGGAATGCTTGTACTAAATTTACATGCTAATGAAATATGAGATATTTGTGGATGGATATGTTTATGTACTCTGAAGTGCTCCTTGTCTTGTCCCATGCTGTATGTGTGACTCTTCTATTGTTTGTTGCCATGCCATAAATAAGAATATACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896594 lncRNA downstream 34107 25320611 ~ 25321253 (-) True G787230
TU896593 lncRNA downstream 34765 25320334 ~ 25320595 (-) True G787229
TU896592 lncRNA downstream 35295 25319746 ~ 25320065 (-) True G787228
TU896587 lncRNA downstream 39419 25315499 ~ 25315941 (-) True G787223
TU896585 lncRNA downstream 43194 25311891 ~ 25312166 (-) True G787221
TU896519 lncRNA upstream 46367 25411943 ~ 25417981 (-) True G787172
TU896630 lncRNA upstream 55144 25420720 ~ 25421022 (-) True G787265
TU896651 lncRNA upstream 82235 25447811 ~ 25448687 (-) True G787281
TU896672 lncRNA upstream 118818 25484394 ~ 25484651 (-) True G787302
TU896673 lncRNA upstream 120403 25485979 ~ 25486239 (-) True G787303
XM_021615248.2 mRNA downstream 10220 25338581 ~ 25345140 (-) False LOC110531812
XM_021615241.2 mRNA downstream 46108 25294038 ~ 25309252 (-) False trmt44
XR_005053214.1 mRNA downstream 46108 25294038 ~ 25309252 (-) False trmt44
XM_021615240.2 mRNA downstream 88074 25262765 ~ 25267286 (-) True LOC110531809
XM_021615238.2 mRNA downstream 93161 25244197 ~ 25262199 (-) True LOC110531808
XM_021615247.2 mRNA upstream 2616 25368192 ~ 25377186 (-) True LOC110531813
XR_005053216.1 mRNA upstream 43983 25409559 ~ 25411629 (-) True LOC118966020
XM_021615257.2 mRNA upstream 68239 25433815 ~ 25444248 (-) False LOC110531820
XM_021615259.2 mRNA upstream 68239 25433815 ~ 25444250 (-) False LOC110531820
XM_021615260.2 mRNA upstream 68239 25433815 ~ 25444250 (-) False LOC110531820
TU896576 other downstream 51669 25294189 ~ 25303691 (-) True trmt44
TU896572 other downstream 63889 25290915 ~ 25291471 (-) True G787211
TU894726 other downstream 390086 24963072 ~ 24965274 (-) True G785578
TU894414 other downstream 736307 24605485 ~ 24619053 (-) False G785329
TU893823 other downstream 1146705 24206652 ~ 24208655 (-) True LOC110531775
TU896757 other upstream 156462 25522038 ~ 25523512 (-) False G787386
TU896721 other upstream 509859 25875435 ~ 25894404 (-) True G787350
TU896702 other upstream 517160 25882736 ~ 25930052 (-) True G787331
TU896717 other upstream 559788 25925364 ~ 25955174 (-) True G787346
TU896731 other upstream 1092124 26457700 ~ 26458029 (-) False LOC110531840

Expression Profile