RNA id: XR_002474762.2


Basic Information

Item Value
RNA id XR_002474762.2
length 2191
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC110531816
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25367365 ~ 25369664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCAGGATGTGAATTGGCTGGACCAAGAGTTCTTGGTCCACACCTGTCTGAGCTCTCTGACCTCACCTTCCTTTCCCCACTGGGAGACAACCCCGGGACTGGGAAGAATGCCGTTCCAAGTCTGCCACCTTCAACGCCCCTCGGTAACACATCCCTGACCCCATGGAACATATCTCCACCCATCATCACGGCAAACCCAAGGACAAGAGAGACAATCGAGGAGTGGGCGATAATGTAACATTGAGACCAGGAGTAGCCACTGATGAAGAAGGCAACAATTCCTCTGGATTCTATTGGAAGCACCCTTACATCCAACCAGCAGAGCAGAAAGGTGAGAATACAGAACAGGGAGGACTGACCATCCTTTACTGGTGAACTGGCTTATTTGTATCCATGTGTTGCAGGATGAACCAAAAGACTACTGGGAATATTTTACTGAATTATCTCCACTCATCCAATGCTGACTTTACAGTTCCAATCAGAATTCATTGTGACTGTTAGTTGGTTGTTTTGTAAAGATGAATTCCCACAAATAGGTTTGAAAGCATgttaatatttatttatatttaagaTATTTAACCTGCTTAGATGTTAGGGACTGAACACCCTCTAGTGGTTGTGTATGTACAACGACAAACATGTGTGCCTaacatcaataaaatgcattccTTATATTTACCGAAGTCACATATATTGGGGAAAAACAAGAGAACAGGTGATCCCCAAAAAAGATTTTATTTTTCAAGCTACAGTTAAAGAAAAACAATACCAGAGGCCGAAAATATAACATCTGCTAGgctttcttttcctctcttttcACTTTCAAATATGTACAGTTATCGAAGAACAGGGTATATACAGAGAATCGAAGGGAAGGGTGGTGGACAGAGTGCATTTGCTTTTTGGGGACTAAACATGACTCTTCCACCAACAAAAAAAGCAAGGTAAAACCAACCAACATAAAAGGACCTGCCACGACACTGGTGATATCAAATTACTTTTCTGTACAATACAAACAGTCTACTTTGTTTCACGAATGAGAATTATGAGGGTGAGGGATTTGTATGTTCTCTGATTTGGAAGCAAATCTCAACTAGCGTTTTCTGAACTTTTAAACAAAAATAATGATAACatgaaagaaatacaaaatatatattttacaaccATTCATGCAAAAAGATGTTCAAGCCACTTCTACAAGGTGAAGTGGCTCCAACTTTTTCCGTCACGACAGTTTACAACAATCACATCAATCTCCCAAACCAGAAGTCTCTAATGAAAAGAACGCACAAATgtgaataaaaacaaaaaaaagcacAGAACAAGCATTGGAGGAATTTGAAGTCTGTCGCCAAGTCAAACCGCAACCAAAGGGTAGTCATGGTATTCCATTGTCATGCAGAGGGAACTCAAAGTAATCAAGTGGTGATGTAGCAGATGTTGACCCACTCCTCAAAGCTTATACTGCACcagttgacaaaaaaaatgtattttaaaaaaatatatatttactggTTATGGGCTGGATCTAAAAACTTTACAGCACAGCCCTTAGTTTAAAAGTTAGTGTATTAGCAATTGCCAAAAGCAATTAACTTTCAAATGAAATAACCACAAAAAAAGGGGGTGTTTGGTTTGGGCTTGTGCTTGTTTTAGTGCACTGTTGTAGCACAAGTTAGTGCATATTTCTATGGAATAGATTGAACATTTCAATTTTGATATGATATTGTTTCAATCAGAAAACCTCTGATGAGAGAAATCCTATAGGGGCTTAACACTGTGGCAAGCGGTACTGAGTGTAATAGACAGAAACTAATAAACAAATGCCAAAATTGAAAGCTTACATAAGAAAAAAGTAGCAAAAAAATAAAGAGAGACCCTTTTTAGACCTAAAAATGAGAAACTTATggacaaaaacaaacatgtttgtTTTCTTTTCAGATAATGAAGGGGGTTGTGCCTCTGCCATGGTGTGGCAGTCGCATTGAACACTGGTTACAGAGGGTCTGACAAAAGTGGATGTACCATTATAAAATACTAGCTTTTTCCTTTGAACGTTGACAGAAAAGCAACCCATCAAATGtcctaaataaataattatctataCCTTGTCATGCACCTTATGCTATGACCTTAATGTAAAAGCCAGGAAATGGATCTCTGTATGGTTGCCTTAGCATttcaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895158 lncRNA upstream 29997 25336682 ~ 25337368 (+) True LOC110531811
TU895185 lncRNA upstream 46236 25320871 ~ 25321129 (+) True G786005
TU895184 lncRNA upstream 46684 25320393 ~ 25320681 (+) True G786004
TU895125 lncRNA upstream 72271 25294064 ~ 25295094 (+) True G785950
TU895123 lncRNA upstream 74546 25292533 ~ 25292819 (+) True G785949
TU895196 lncRNA downstream 38939 25408603 ~ 25410380 (+) True LOC110531817
TU895249 lncRNA downstream 116748 25486412 ~ 25486645 (+) True G786068
TU895276 lncRNA downstream 167860 25537524 ~ 25543652 (+) True G786089
TU895280 lncRNA downstream 177508 25547172 ~ 25547776 (+) True LOC118966182
TU895298 lncRNA downstream 204531 25574195 ~ 25577299 (+) True G786109
XM_021615242.2 mRNA upstream 27607 25323999 ~ 25339758 (+) False LOC110531811
XM_036987668.1 mRNA upstream 43259 25315362 ~ 25324106 (+) False LOC118966019
XM_036987667.1 mRNA upstream 43264 25315459 ~ 25324101 (+) True LOC118966019
XM_021615237.2 mRNA upstream 169780 25194781 ~ 25197585 (+) True LOC110531807
XM_021615236.2 mRNA upstream 259140 25103853 ~ 25108225 (+) True LOC110531806
LOC110533008 mRNA downstream 26615 25396279 ~ 25397954 (+) True LOC110533008
XM_036987669.1 mRNA downstream 29845 25399509 ~ 25410386 (+) False LOC110531817
XR_005053215.1 mRNA downstream 29869 25399533 ~ 25409216 (+) False LOC110531817
XM_021615249.2 mRNA downstream 29872 25399536 ~ 25410386 (+) False LOC110531817
XM_021615250.2 mRNA downstream 42107 25411771 ~ 25418108 (+) True LOC110531818
TU894522 other upstream 415269 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 784488 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1280039 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1528251 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1563228 23802586 ~ 23804137 (+) True LOC110531761
TU895266 other downstream 158009 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 175567 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 343333 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 588420 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 1043448 26413112 ~ 26413532 (+) True G786496

Expression Profile