RNA id: XM_021615250.2


Basic Information

Item Value
RNA id XM_021615250.2
length 1482
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110531818
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25411771 ~ 25418108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGGTCGGGAACTCCgcttctttctagagctccgaatTCCCGACCTAAATATCACTGATGTAATGATTTGACACCGATTTTTTCATAGTtccaagttgtcttgaaagcacaatGAGCGTAGCCTAAACTATTTAGCAAATTCGACGTGCAGACCTCTCTTGCGCTTGTTGTTATTGTATCCTTCCGCTGCAGCCGTACTAGGAAAGAATCCGAGCAAAACAGCAGTCTTGACCTGTGTTCCATCGAATTGTTACTTGAGGATATCTCAGATCGACACCCTGTCATTCGTTTGACAATGAAGTTCCAATACAAAGAGGAACATCCATTTGAAAAGAGACGGTCTGAGGGCGAGAAAATAAGGAAGAAGTATCCGGACAGGGTGCCTGTAATTGTGGAAAAAGCCCCCAAAGCAAGGATAGGAGATTTGGACAAGAAGAAATACCTCGTGCCCTCCGACCTCACGGTGGGCCAGTTCTACTTCCTCATCCGAAAACGAATCCACCTGCGGGCAGAAGACGCCTTATTCTTCTTTGTAAACAACGTCATTCCACCCACTTCCGCCACCATGGGCCTGCTATACCAGgAGCACCATGAAGAGGACTTTTTCCTCTACATTGCCTACAGTGATGAGAGTGTCTATGGAGACAACCATACAGAAATTTGAACCTCCTCCCTTCCTcaaccaagcccccccccccccccccaaaccacaCCCTGTGTCTATTGAAATGCTGTATCCAGCTCAGCAGCCTGGAGTTCCCGGAGCAAAGATGTCAGATGCACTTTCACTCCCCCTCCTGTTATCCCTTTGTTTTTACCCCTTTAGTACTATTCCAACAGTGAGAATTTTATTTGCCTCCAGGTCTTTGAGAGAGGGATTTCATTTGAATGGTCCCGTAAGCCAGTTTTCATAGTGCTTTGATCATGCTGAAACCGAGAACAGATGCCATTTTGAAACGACTGTTAGAATTAGGCAATGTTACCAGTTATTCTAAAGATGAGGGTTAAGAAAGGAGGTAGCCTTTGGATCTACCGTGATTAAATTCGGCTCCATTTGGCAATGAAAAAATGTAATGTGTTTTATTAATGTCGTAGTGCTGGTAAGATACTTTGAAGACGTAGTGTATTTGACATCTGACTGGAGTAGAATAGAATTCGAACTGAACaatcacccccccctctctgctttgtggttaaaaaatatattattatgattattgtACTTTATTTTTTGATTTCTGAGGTATTGtaaagcaattttttttgtttccttttttAAAAGTTGGAACTCGTTATACAGCTACGTTACTGGCGTCTCCACTCATGATCATACATGATAAAATGTGACGACAAGCGAACTCTTGTTTCCTGTCTGTTCTTAACTGTCGGTCTTCATTTTTCTGCTGTATGTGAACATATTGAAATGGTTTCCGCGACCATAGTCTTGAGAGAGAGAGCCTGAATAAAGaacatacattta

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0007420 brain development biological_process

KEGG:

id description
K08341 GABARAP, ATG8, LC3; GABA(A) receptor-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895196 lncRNA upstream 1391 25408603 ~ 25410380 (+) True LOC110531817
TU895158 lncRNA upstream 74403 25336682 ~ 25337368 (+) True LOC110531811
TU895185 lncRNA upstream 90642 25320871 ~ 25321129 (+) True G786005
TU895184 lncRNA upstream 91090 25320393 ~ 25320681 (+) True G786004
TU895125 lncRNA upstream 116677 25294064 ~ 25295094 (+) True G785950
TU895249 lncRNA downstream 68304 25486412 ~ 25486645 (+) True G786068
TU895276 lncRNA downstream 119416 25537524 ~ 25543652 (+) True G786089
TU895280 lncRNA downstream 129064 25547172 ~ 25547776 (+) True LOC118966182
TU895298 lncRNA downstream 156087 25574195 ~ 25577299 (+) True G786109
TU895329 lncRNA downstream 201969 25620077 ~ 25620295 (+) True G786133
XM_036987669.1 mRNA upstream 1385 25399509 ~ 25410386 (+) False LOC110531817
XM_021615249.2 mRNA upstream 1385 25399536 ~ 25410386 (+) False LOC110531817
XR_005053215.1 mRNA upstream 2555 25399533 ~ 25409216 (+) False LOC110531817
LOC110533008 mRNA upstream 13817 25396279 ~ 25397954 (+) True LOC110533008
XR_002474762.2 mRNA upstream 42107 25367365 ~ 25369664 (+) True LOC110531816
XM_021615252.2 mRNA downstream 8290 25426398 ~ 25433817 (+) False LOC110531819
XM_021615255.2 mRNA downstream 8290 25426398 ~ 25433817 (+) False LOC110531819
XM_021615254.2 mRNA downstream 8302 25426410 ~ 25433817 (+) False LOC110531819
XM_036987673.1 mRNA downstream 8580 25426688 ~ 25433814 (+) False LOC110531819
XM_036987671.1 mRNA downstream 8601 25426709 ~ 25433817 (+) False LOC110531819
TU894522 other upstream 459675 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 828894 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1324445 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1572657 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1607634 23802586 ~ 23804137 (+) True LOC110531761
TU895266 other downstream 109565 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 127123 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 294889 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 539976 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 995004 26413112 ~ 26413532 (+) True G786496

Expression Profile