RNA id: XM_036987672.1


Basic Information

Item Value
RNA id XM_036987672.1
length 1388
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110531819
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25426398 ~ 25433817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacgttagctagctgatgCTGGCCCCtccactgcctgtcaccatgcCTGCTCTGCTGGACAGACCGAAGCTGTCCAACGCTATGGCCAGAGCCCTCCACAAACACATAATGAGAGAAAGGGAGCGTAAAAGACAAGaggaggaagaggtggacaaGATGATGGAGCAGAAGAtgaaagaggaagaagagagaaagagaacaaaagagatagaggagaggatgtcCTTGGAGGAGACCAAAGAACAGGTGATGAAGATGGGGGAGAAACTGCAGGGACTTCAGGAGGAGAAGCATCAGCTCTTCCTCCAGCTGAAGAAGGTCCTGcacgaggaggagaagagacgcAGGAAGGAGCAGAGTGACATCACAACACTGACGTCAGCCAGCTACCAGCCCAGTCTAACCGTGCACACAGGACAGCATCTCCTTAACATTGAATGCAGTCCAGTCAGTCACAACAGGGCCGGGGGACTGCTGTCGGAGCGCAGTAAGCAGTTGTTTCCAACACCGGTCAACCCGGGCCGTCACTACCAGAACCAGGCTGGGTTCAGTGCGGGCCCGGCTGAGCACGGACAGTTTGGGGGTAGTCAGTCGGTCCACGAGAGCTACGGCGTGGCCCAGACACAACACCCCTCCACCTACGCCCCCGGCCCCTCTGTACCTGTTAGCTTTGCCAGCAGCTCCCAGATCAGAGGTGTGTCTGCATTCCAGGCAATGCAGTACCTCCCTCATCAGCAGCCAGGCTATGCTGTTCATAGTCACTTCACATCCCAGCCTGGATTCATCCCTGGTGCCGGAATACCCCTTCAGAAGCAGTTGGAACATGCCAACCAACAGTCTGGCTTCACTGACGCGGGTGCTCTGAGACCCATGCACCCCCAAGCCCTCCATACGTCCGCTGCTAGCCTGCTCCCTACTCCCTCCATGGCTGTCCAGATCCCCACTCCCAAGGCCCCTTTCCAGAGCTCTCCCCAAGCGGCTCCCCGCAACGCTTTCCTCCCCCACACCCAGAGTGGACAGAGATTCTATCAACACAGCAagtaaccatggttacctgccCAAACTACCTTTACCAGGAGTTCTTATCGTTGAGATTTCATAGGCTTCTAGAAGACTGGAATTATGGGACAGTAAAACTTGGATTTTAATGGTTGATTGTAAAGCCCAAACCTACAGGCTTGACTTTTTGTAGTAATATTTCTTGTATAGTTTATTTTGTTAGTGCTGTATTACTTTAGTTTTAGAGGCCTAGGTGTTCTAGGAAACCATTTTCTCCACTGTGAAACTGTATAGTGTTATACTTTGTCAATTTGATTGTGTCTTTGGATGTATTACCTTAAACTATTATGTccgtgaaataaataaataaagcacACACCATTTCTAA

Function

GO: NA

KEGG:

id description
K15307 GPS2; G protein pathway suppressor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895196 lncRNA upstream 16329 25408603 ~ 25410380 (+) True LOC110531817
TU895158 lncRNA upstream 89341 25336682 ~ 25337368 (+) True LOC110531811
TU895185 lncRNA upstream 105580 25320871 ~ 25321129 (+) True G786005
TU895184 lncRNA upstream 106028 25320393 ~ 25320681 (+) True G786004
TU895125 lncRNA upstream 131615 25294064 ~ 25295094 (+) True G785950
TU895249 lncRNA downstream 52595 25486412 ~ 25486645 (+) True G786068
TU895276 lncRNA downstream 103707 25537524 ~ 25543652 (+) True G786089
TU895280 lncRNA downstream 113355 25547172 ~ 25547776 (+) True LOC118966182
TU895298 lncRNA downstream 140378 25574195 ~ 25577299 (+) True G786109
TU895329 lncRNA downstream 186260 25620077 ~ 25620295 (+) True G786133
XM_021615250.2 mRNA upstream 8601 25411771 ~ 25418108 (+) True LOC110531818
XM_036987669.1 mRNA upstream 16323 25399509 ~ 25410386 (+) False LOC110531817
XM_021615249.2 mRNA upstream 16323 25399536 ~ 25410386 (+) False LOC110531817
XR_005053215.1 mRNA upstream 17493 25399533 ~ 25409216 (+) False LOC110531817
LOC110533008 mRNA upstream 28755 25396279 ~ 25397954 (+) True LOC110533008
XM_036987675.1 mRNA downstream 12336 25446153 ~ 25451114 (+) False LOC110531823
XM_036987676.1 mRNA downstream 12336 25446153 ~ 25451114 (+) False LOC110531823
XM_036987677.1 mRNA downstream 12336 25446153 ~ 25451114 (+) False LOC110531823
XM_036987678.1 mRNA downstream 12336 25446153 ~ 25451114 (+) True LOC110531823
XM_036987679.1 mRNA downstream 74727 25508544 ~ 25523517 (+) True LOC110531824
TU894522 other upstream 474613 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 843832 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1339383 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1587595 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1622572 23802586 ~ 23804137 (+) True LOC110531761
TU895266 other downstream 93856 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 111414 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 279180 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 524267 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 979295 26413112 ~ 26413532 (+) True G786496

Expression Profile