RNA id: XM_021615260.2


Basic Information

Item Value
RNA id XM_021615260.2
length 2359
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110531820
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25433815 ~ 25444251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTGGAAAGGCTGGGTGAGGGAGTGAGCGAAAGGCGGAGAGTGCTAGGCTACGGACATTGTGGGTTTAAGGTTCCCACTCTTTTTAGGCTGGCGGCTGACCCAAGCGTATgcgccccccctcccctcccccaacgAGAACGATTTCGACGGAGCCGCAGGACAAAATAGGGAGGATAGTGGAAGCTACTggaatgagagaagaagagagctgATTTAGGAGATAAGCAGGTATGGCAGACGCAGACGTCGACTTCCAGACAGGCGATGCCGGGGCATCCGCCACCTTCCCCCAGCAGTGCTCAGCCCTGCGCAAGAACGGCTTCGTGGTGCTGAAGGGACGACCCTGCAAGATCGTGGAGATGTCCACGTCCAAGACCGGCAAACACGGCCACGCTAAGGTCCACATGGTTGGTATTGACATCTTCAACGGAAAGAAGTATGAGGATATCTGTCCCTCCACCCACAACATGGACGTACCCAACATCAAGAGACTAGACTACCAGTTGATTGGGATCACGGATGGTTACTTGTCTCTGCTCCAGGACAGCGGTGAAGTGAGAGAGGACCTGAAGATGCCAGAAGGAGACATGGGCAAAGAAATTGAAACCAAGTACGACGCTGGAGAGGAGATTCTGATCACTGTTCTGTCTGCGATGAATGAGGAGGCTGCAGTTGCCATCAAGGCCATGGCTAAATAAGACACTGCAGGAGTTAACAAGATGCACTGGACCTGGAAAAGGGAGGGAGTAAGGCCACGTCAATGCTATTCTCCCACTTTTGTTTTtgtaatctctctccctctcactgtacTTTCTCGCCCTTCTCTGGGTTAAATTAGGAACGCAATTCAATAAATAATTGGAAATGGCAAAAcattctctccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctgtacagaTGAAACGGAGAGAGAAGGTAGAATAGAGAAAGAAGTGTTTTCTCACAAACAAATTGCCGCCTATGAGGGCAGGGCGTAAGTAACTACTGTACCTAGTcaagggaggaggggtgagaatcTCACAAATGTCTGTTTTGTACATTTTTCCGATTCATCAAGGGCTTCTTCAACTCTATGCATGAGTGATGGATGCTGTTCTGTTTAGGAGCTCATTCAGCGGGAGCACTGTGCTTGGAATGTTACAATAGAAATATAGCATACAGCATTGAAATTGGTGCCAGTTCTAGAACATGGAGATTGTGTCAGGTCTATACGTTCCATTTCTATCTGACGTTCTGAGTGATCCGCCCTTCTGAATGAGCCCCTTCTGTCTTGTTCAATATTTTGTGTAATGTATAGCACCTAAACCTGTCTGTTAAAAAAACGTGTCATGATTTACATGCTAGGACcagggcccagattcacaaaaccttcTTAAGAAGAAATGTCTTACCAGCCATTTTTTCCTTAACTATAGACTTATGATGAAAGGTAAACAGAGTTGCTATTCCTCAAAAAAGGTTATTGGAAATGTACTTGCACTATTTCTTATGTTTCTCCTTTTAAATAAGAAGTTAAGAAGAAATTAGATTCTTGAATATAAAGTTTGGGGATTTGTTCCTAATTCCAAGATAGCTAAACCCTTTGTCTTGAACTCAGGGCAGTGAGAGAAAAAGCTCATGAAagcaattgaacatgtttaattcacTCACAAACCTCATCTGAAAGTTTCAGTATTTATTATTTTAAACCCAAGAACATACTAGAACAGTAATCTCAGTAGAAAATAGGATTGCCTTTGCTAGATAAATGTTGTTGCTAGGCAACCGATTTAAGAAGACTAACAAGATATGAGAAGTTTGTAGGAAAATCCTAAAATCTTAAGATATTAAGGAATTTTTTTCTTAAGAATATTCTTATGTaagtgttttgtgaatctggggCCAGTTCTTTGAGTAGGAGTTGAACAAGTGTCACACAGTAGCATTTGGGAGAAATGAAACTAGCAACCCAATTCCAGTGTCAATTTCAGTCTTTCAGATATCTGATCAAGTCCGTGCACAAGACTAAGTCCTTTCTTTGCGCAATCGGCCCCTTATCTTCCATTACCCTCAAAGGCTGGGCAAAGACCTTATCGACAGGGGCTGCCAACAGggcaggtagctagctagtagaCACACTGGGTCACCTATAGAGAGAAGCATCAAGTTTTTGACCCATTATTACTTTGTACAAACTCCTGAATGAGAAAAAGTTATGGCATTTGGTTTTTGCATTCACAAAAGTccaaaatgtgcagaatgtctACCCGCCCCAAAACAAATTAAAGAAGACACAAATTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896630 lncRNA downstream 12793 25420720 ~ 25421022 (-) True G787265
TU896519 lncRNA downstream 15834 25411943 ~ 25417981 (-) True G787172
TU896594 lncRNA downstream 112562 25320611 ~ 25321253 (-) True G787230
TU896593 lncRNA downstream 113220 25320334 ~ 25320595 (-) True G787229
TU896592 lncRNA downstream 113750 25319746 ~ 25320065 (-) True G787228
TU896651 lncRNA upstream 3561 25447811 ~ 25448687 (-) True G787281
TU896672 lncRNA upstream 40144 25484394 ~ 25484651 (-) True G787302
TU896673 lncRNA upstream 41729 25485979 ~ 25486239 (-) True G787303
TU896758 lncRNA upstream 77788 25522038 ~ 25523512 (-) False G787386
TU896759 lncRNA upstream 77788 25522038 ~ 25619623 (-) False G787386
XR_005053216.1 mRNA downstream 22186 25409559 ~ 25411629 (-) True LOC118966020
XM_021615247.2 mRNA downstream 56629 25368192 ~ 25377186 (-) True LOC110531813
XM_021615246.2 mRNA downstream 68237 25355360 ~ 25365578 (-) False LOC110531812
XM_021615244.2 mRNA downstream 68239 25355360 ~ 25365576 (-) False LOC110531812
XM_021615262.2 mRNA upstream 6868 25451118 ~ 25484221 (-) True LOC110531822
XM_021615267.2 mRNA upstream 109766 25554016 ~ 25564891 (-) True LOC110531826
XM_036987680.1 mRNA upstream 126366 25570616 ~ 25580847 (-) False LOC110531827
XM_036987683.1 mRNA upstream 126366 25570616 ~ 25582248 (-) True LOC110531827
XM_036987684.1 mRNA upstream 142280 25586530 ~ 25603298 (-) True polr2a
TU896529 other downstream 75999 25355354 ~ 25357816 (-) True LOC110531812
TU896576 other downstream 130124 25294189 ~ 25303691 (-) True trmt44
TU896572 other downstream 142344 25290915 ~ 25291471 (-) True G787211
TU894726 other downstream 468541 24963072 ~ 24965274 (-) True G785578
TU894414 other downstream 814762 24605485 ~ 24619053 (-) False G785329
TU896757 other upstream 77788 25522038 ~ 25523512 (-) False G787386
TU896721 other upstream 431185 25875435 ~ 25894404 (-) True G787350
TU896702 other upstream 438486 25882736 ~ 25930052 (-) True G787331
TU896717 other upstream 481114 25925364 ~ 25955174 (-) True G787346
TU896731 other upstream 1013450 26457700 ~ 26458029 (-) False LOC110531840

Expression Profile