RNA id: XM_036987676.1


Basic Information

Item Value
RNA id XM_036987676.1
length 1715
RNA type mRNA
GC content 0.56
exon number 10
gene id LOC110531823
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25446153 ~ 25451114 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGATCCCGGGAGGTTGTCGGGATAAAAAGTTTGCGGTGGCGGCCAGAGCAAAGTTTGGAGAGGGGGATATTGTTGTAAACGTGTATCCGTGAGAGTATGACCGACGCAGAAGCGCAGAGCGCCCCACCGTCGGCTCCGGTGGAAGAACAGCCACAGCCGGAGAGAAAAATTATAGCCACCGCAGTCCAAGGCACCGTGAAATGGTTCAACGTGCGCAACGGATATGGCTTTATCAACAGaaacgACACCAAAGAGGATGTCTTTGTTCATCAGACTGCCATCAAGAAGAACAACCCCAGGAAGTTCCTTCGCAGTGTTGGGGATGGGGAGGTGGTAGAGTTTGACGTGGTCGAGGCCGCCAAGctctctctctccccctctcagggCTCGGAGGCAGCCAACGTGACAGGGCCTGGTGGGGTTCCCGTTAAAGGCAGTCGGTACGCGCCCACCAAACGCCGTTTCCGCCGGCGTTTGTCCTCTCGCAGCCCCAGGCCCGGTGACGAGAAGGGCGACGGCACCTCAGGCCCCACTTCGGAGCACGGAGGAGAGCACGACGGTGAGCGGCCCGGAGACAGGCCCCCACCGCGCCGGCGCAGGCCCCGCCGACCCAGACAGGAAGGGCAAGAGGGCGAGCCAGGGGAACAGGAGGTAGGCGCAGAAGGCGACCAGCAGAGGCCTCCACCGCGCAGGTTTAGGACCCAGTACCGTAGGCCATTCCGTCCTCGCCCACCTCCCGGGGAGGTTCAGGCGGGTGCTGCCACCTCAAAGGGCCAGGCAACAGAAGGGCAGGAGGTGGTGGAGGCCCAGGAGGGCCAGCAGACAAACAGGGAGCAGGCCAACGAAGACGGCCAAAAGCCCCGCCGACAGTTCAGCCGCCGCAGGCAGAGGAACTCCGAATCTAACTCTGTCTCTAAAGATGGGACAGAGAAGCCCGAAAAGCTAGCCTCGGAACCTAGCACTCCCCTTCAGACAGCCAAGCCAGCCGACCCCAAATCCTCCCCCAAATCCTCACCTAAAGGCTCCCCCAAAATGTCCCCCAAAATGTCCCCCAAGTCCTCCCCCAAATCACCAGAGCCACCTGCCACGACAGTTCCCGCAGCCACAGAATGACACCCATGATGGGACGGTGTAACGTGACCCCAGACAAGAGGTTCCTAGGGAGGGTTAGCTGGGGGACCGAGCCCCTCTCACCACACCCACCACTGTGCACTACTCTCCAATCCCCCCATCCCATcttactgaccccccccccctgactTGTCTAGCTAGACACTGCAAATGGGagaaggatgggagggagggagttgcgTGTATTCATAAATGTTAAAATACGCCTAGAAAGATCTAGAGGAAAGAAAGTATTTAAAAATCTGCTTGGATGCCCAGTTACTCCACAAACCCCGAGCTAGTTTACTTTAATTGACTGAGAATGGGCATGAGCAGTAGAGGTCCCAGCTGCTATTTTAAGTTTGATGATGTGGAAAGCGAAGCGTGTGTGAGGGTAGTTGTCCAGGAGTTGCGACGATAACCTTGCCACCCCCCTAGTTTCTAACATGCTGCAGCCCACACCCTATTTGGAAAATCAAGGCCGGGggttggtttaaaaaaaatatacatttttgttcTACTTATTTTTGTATGTGCTTTTCTTTTGGAGGGGATTATGTGCAATGTCAGTATCTAAATGTCGataaaatgtttgcaaaaaccA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895196 lncRNA upstream 35773 25408603 ~ 25410380 (+) True LOC110531817
TU895158 lncRNA upstream 108785 25336682 ~ 25337368 (+) True LOC110531811
TU895185 lncRNA upstream 125024 25320871 ~ 25321129 (+) True G786005
TU895184 lncRNA upstream 125472 25320393 ~ 25320681 (+) True G786004
TU895125 lncRNA upstream 151059 25294064 ~ 25295094 (+) True G785950
TU895249 lncRNA downstream 35298 25486412 ~ 25486645 (+) True G786068
TU895276 lncRNA downstream 86410 25537524 ~ 25543652 (+) True G786089
TU895280 lncRNA downstream 96058 25547172 ~ 25547776 (+) True LOC118966182
TU895298 lncRNA downstream 123081 25574195 ~ 25577299 (+) True G786109
TU895329 lncRNA downstream 168963 25620077 ~ 25620295 (+) True G786133
XM_021615255.2 mRNA upstream 12336 25426398 ~ 25433817 (+) False LOC110531819
XM_036987679.1 mRNA downstream 57430 25508544 ~ 25523517 (+) True LOC110531824
XM_021615266.2 mRNA downstream 74257 25525371 ~ 25532692 (+) False LOC110531825
XM_036986934.1 mRNA downstream 81316 25532430 ~ 25536173 (+) True LOC118936682
XR_005053448.1 mRNA downstream 89867 25540981 ~ 25542036 (+) True LOC118966181
XR_005053449.1 mRNA downstream 95991 25547105 ~ 25547900 (+) False LOC118966182
TU894522 other upstream 494057 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 863276 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1358827 24082256 ~ 24087326 (+) True hacd4
TU893032 other upstream 1607039 23834164 ~ 23839114 (+) True LOC110531763
TU893030 other upstream 1642016 23802586 ~ 23804137 (+) True LOC110531761
TU895266 other downstream 76559 25527673 ~ 25532277 (+) True LOC110531825
TU895278 other downstream 94117 25545231 ~ 25546967 (+) True G786091
TU895142 other downstream 261883 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 506970 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 961998 26413112 ~ 26413532 (+) True G786496

Expression Profile