RNA id: XM_021615262.2


Basic Information

Item Value
RNA id XM_021615262.2
length 3245
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110531822
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25451118 ~ 25484221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCACCcctcacaccctccctctctcatttagAAAATACCAAGAGAGGTGTGCGCCAATGTCATTCTATCCAAGGTAGACCCGGACTCGCCACGAACTTCAAAgcgaggagactcagagttaaAACTTTTGAACTGTTGCAACCTTGTCGCTTTTCACTTGTGTTTCAATTTTAGCCTTGGATTTGACTTTACCGGTCAACATTTAATACAAGTGCCAGGCTTATTGTCCATATTCCAAGTGAGGGTTTTCACGTCGTGTCCAGTTGGGAGTGTGCGTGGGGGAGCGGGACAACTGTCACGGACTGTAATTGGTGTCTCACGCGGTCAAAGCCATGCCGCCTGGGTTTCAGCAACTTGGAGTGGAGACAGTGACTGGAACCCTTGCTCTCTCAGTGTTCACTGCTGTATTGGGCTCCTTTCAGTTTGGATACAATATCGGCGTCATCAATGCACCTCAGAAGATCATTGAGGCGGACTACAATGCTACATGGGTGCACCGGTATGGAGAGCCCATTCCCACCGCTACACTCACCACTCTGTGGTCCCTGTCGGTGGCCATCTTCTCTATAGGAGGCATGATCTCTTCCTTCTGTGTGGGCGTCATCTCAGAATGGCTGGGCAGgaggaaagccATGCTCATAAACAACTTGTTTGCCTTCATCGGAGGAGGTTTGATGGGCATGGCCAAAATCAGCCGGTCCTTCGAGATGATGATCCTGGGACGCTTCGTCATCGGTGCATACTGTGGGTTGGCATCAGGGCTAGTGCCCATGTATGTGGGCGAGATAGCGCCTACAAGTCTGCGAGGTGCTTTGGGCACGCTCCACCAGTTGGCGATCGTCACAGGGATTCTCATAGCACAGGTCCTAGGTCTGGAGTCTTTGCTGGGCAGTGAGGAGTTGTGGCCAGTGCTGGTGGGTGTGACCGTTCTGCCCACTGTCCTGCAGATGGTGCTGCTGCCCTTCTGCCCCGAGAGCCCCCGCTTTCTCTACATCATCCGCTGCCAGGAGCACCACGCCAAGAGCGGCTTGAGGAGGCTGACCGGGAGGCAGGAGGTGGGGGATATGCTGGCGGAgatgaaggaggagaagaggaggatggacaTGGAGAGGAAGGTGTCCATCGCAGAGCTCTTCCGCTCCCCCATGTACCGGCAGCCCATCATCATCGCCATCCTGCTGCAGCTCTCACAACAGCTCTCTGGAGTCAACGCTATCTTCTACTACTCCACCAGTATTTTCCAGAAGGCAGGGGTCCAGAGCCCCGTCTACGCCACTATAGGAGCCGGCGTGGTCAACTGTGCCTTCACCGTGGTCTCGCTCTTCCTGGTGGAGAGGACGGGCCGCAGAACGCTACACATGCTGGGGCTGTCCGGAATGTGCGGCTGTGCTATTGTCATGACGATAGCTCTTGCCTTATTGGACAGTGTTCCCTGGATGAGCTACATCAGCATGCTGGCAATCTTTGGCTTCGTGGCCTTCTTTGAGGTGGGGCCTGGCCCCATCCCCTGGTTCTTTGTGGCTGAGCTCTTCTCCCAAGGCCCCAGGCCCGCTGCGATGGCCGTGGCCGGATTCTCCAACTGGACGGCCAACTTCATTATTGGCTTTGGCTTCCAGTATCTCGCTGAGCTTTGTGGGCCTTATGTCTTCCTCATCTTTGCAGTGCTCCTTGTCTTCTTCCTCATCTTCACCTTCTTCCGGGTGCCGGAGACACGGGGCAAGACGTTCGACCAGATCTCCGCCTCCTTCAGCCAGCACCCACCCGCCATGATGGACCTGGACATGGAGCTGGGCAAGCAGAGTACAGAGCTGGACTACCTGGGGGGGGAGGGAAGCCTTGACTAATGGGGTCCCATGGGGGAACTGGGGAGGGCAGGCTGAGGAGGCCAGACAGACTCTTGGTTAGGCAGGGAAACTCAGAGGGCTACAACTGGGTACTAAGGGGTGGGCTTGGGCCTAATTCAAACATACTTTGAGTTGTGTCTAGGCATATCGAGCAAGGTTGGCGTATGGGTCAAGGTTTAGGGAGGTGGGATGGATTTGGAACTGGGCCCGTAGTTGGGAAATGGAGCTTGAGGGAGATATGTTGACAGGAACGGGTTGCTCGAGGAAAAGGCTGTGCAACATTAAAGCATTGCACCAACTTAACATACCCCAGAAAGGGTGGCGGGTGAGTGATTTTATTACCAGGGCAACCCATAATGGGTAATAGAGGGGATGATCAGGAACAAGAATAAGGTTCCTGAACTTTGAGGCATTACCCCCGCCCGGGTGTACATATGCTGATGGGGGATGGAGATTTGATTGAGACTGCGCACAGATGTTCTATGGAGAGAGGGGCTTGGAGGTATTCCTGCACTTTATATACAAAAATGTCAGCAGTTTTCAGATTGATAGCTGGTTACAATAACAGCTAGTGTGGAAACCCATGTACATTTTTAGTGAGCAAAGCTATGGTGTGTGGCATTGAGTGATTTATTTCCGAGTTACTGTAAAGTTGTCTCAGTGGGCTAACCAGTCTACCGCTAGCAACCCACTTCCCCTTTGGAAGTGTCCCTAAACTTGATTTCACAAGATGGACAGCTTTAACATGACTCATTGCACAGCCTACAGAGAAGTTACTTTTAACGAGAGCAAATCATGTATTTAGTACTTAAATGTATATAGCGTGCTGGTTTGAGTGAAAAAAACAAAATGGTACAAGGGTCTTCAAATACTCAAACTTTACCCACTCCAATATGAGTTTGTCTTTGGTTTCTATGGGGTTGTGCACAATAGTTGATTTGGTTGGTTTTGACTGCTACTGCATCAGCAATCTGTCCCTGAACTACAACACATGTGCTGTCTTCTGTACTGGTTGTGATTGTACAGTTGTCTTTGAAGATTTGTATTGAACAAAGAGAATCTGTAATTTATATGAAGTGTGAATATTGATAAAGTATCCTGTATGGTTTGTATGACAATTGTTCCCATTTCAAACATGAGCATGTTGATGCCCCAACATTTCAGTGAGTCTCTAGTTACTACCATCCCGAGAAAAGGGTCATATTGAATACAAATATACTGCAATTTAATGTTACAGCTTTTATCAAGTGTCTGATGCTCTGTTTTCAGATTCTACTGGAGTTGGAATTTAAGAAATGCAATTACTTGCTCTGGTTTTATCCCACTAAAATGAGAGTCAAGGCAGACATATTTTACATTTcctggactgtgtattgtggaCATTAAAGACATGACTGCA

Function

GO: NA

KEGG:

id description
K07191 SLC2A4, GLUT4; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896651 lncRNA downstream 2431 25447811 ~ 25448687 (-) True G787281
TU896630 lncRNA downstream 30096 25420720 ~ 25421022 (-) True G787265
TU896519 lncRNA downstream 33137 25411943 ~ 25417981 (-) True G787172
TU896594 lncRNA downstream 129865 25320611 ~ 25321253 (-) True G787230
TU896593 lncRNA downstream 130523 25320334 ~ 25320595 (-) True G787229
TU896672 lncRNA upstream 173 25484394 ~ 25484651 (-) True G787302
TU896673 lncRNA upstream 1758 25485979 ~ 25486239 (-) True G787303
TU896758 lncRNA upstream 37817 25522038 ~ 25523512 (-) False G787386
TU896759 lncRNA upstream 37817 25522038 ~ 25619623 (-) False G787386
TU896760 lncRNA upstream 37817 25522038 ~ 25523512 (-) True G787386
XM_021615261.2 mRNA downstream 6867 25433815 ~ 25444251 (-) False LOC110531820
XM_021615259.2 mRNA downstream 6868 25433815 ~ 25444250 (-) False LOC110531820
XM_021615260.2 mRNA downstream 6868 25433815 ~ 25444250 (-) False LOC110531820
XM_021615258.2 mRNA downstream 6868 25437734 ~ 25444250 (-) True LOC110531820
XM_021615257.2 mRNA downstream 6870 25433815 ~ 25444248 (-) False LOC110531820
XM_021615267.2 mRNA upstream 69795 25554016 ~ 25564891 (-) True LOC110531826
XM_036987680.1 mRNA upstream 86395 25570616 ~ 25580847 (-) False LOC110531827
XM_036987683.1 mRNA upstream 86395 25570616 ~ 25582248 (-) True LOC110531827
XM_036987684.1 mRNA upstream 102309 25586530 ~ 25603298 (-) True polr2a
XM_021615280.2 mRNA upstream 228750 25712971 ~ 25732992 (-) False LOC110531833
TU896529 other downstream 93302 25355354 ~ 25357816 (-) True LOC110531812
TU896576 other downstream 147427 25294189 ~ 25303691 (-) True trmt44
TU896572 other downstream 159647 25290915 ~ 25291471 (-) True G787211
TU894726 other downstream 485844 24963072 ~ 24965274 (-) True G785578
TU894414 other downstream 832065 24605485 ~ 24619053 (-) False G785329
TU896757 other upstream 37817 25522038 ~ 25523512 (-) False G787386
TU896721 other upstream 391214 25875435 ~ 25894404 (-) True G787350
TU896702 other upstream 398515 25882736 ~ 25930052 (-) True G787331
TU896717 other upstream 441143 25925364 ~ 25955174 (-) True G787346
TU896731 other upstream 973479 26457700 ~ 26458029 (-) False LOC110531840

Expression Profile