RNA id: TU895280


Basic Information

Item Value
RNA id TU895280
length 238
lncRNA type sense_over
GC content 0.45
exon number 2
gene id LOC118966182
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25547105 ~ 25547900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCTAAGAAGAGGGTTCTGACTATTACCATGAAGTGTTCGTCCAGCGTACCCCTCTACTGCGAGGACATCCGCACACAGACAGAGGTCCTGTCAAAGTTGCAGGAGCATTTCCGCAAGGAGTTCTACAAGAAGATAGATATTGTGTTCTGGGAACTGGACTGGAGAGAGGCATAATATCTCACACAAGCTTGACCAAATactactactttaatacacatttaAGGGAATTTGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895276 lncRNA upstream 3520 25537524 ~ 25543652 (+) True G786089
TU895249 lncRNA upstream 60527 25486412 ~ 25486645 (+) True G786068
TU895196 lncRNA upstream 136792 25408603 ~ 25410380 (+) True LOC110531817
TU895158 lncRNA upstream 209804 25336682 ~ 25337368 (+) True LOC110531811
TU895185 lncRNA upstream 226043 25320871 ~ 25321129 (+) True G786005
TU895298 lncRNA downstream 26419 25574195 ~ 25577299 (+) True G786109
TU895329 lncRNA downstream 72301 25620077 ~ 25620295 (+) True G786133
TU895330 lncRNA downstream 94036 25641812 ~ 25642049 (+) True G786134
TU895153 lncRNA downstream 112905 25660681 ~ 25662373 (+) True LOC110531830
TU895362 lncRNA downstream 196524 25744300 ~ 25744526 (+) True G786166
XR_005053448.1 mRNA upstream 5136 25540981 ~ 25542036 (+) True LOC118966181
XM_036986934.1 mRNA upstream 10999 25532430 ~ 25536173 (+) True LOC118936682
XM_021615266.2 mRNA upstream 14480 25525371 ~ 25532692 (+) False LOC110531825
XM_036987679.1 mRNA upstream 23655 25508544 ~ 25523517 (+) True LOC110531824
XM_036987677.1 mRNA upstream 96058 25446153 ~ 25451114 (+) False LOC110531823
XM_036987688.1 mRNA downstream 55985 25603761 ~ 25629568 (+) False zbtb4
XM_036987694.1 mRNA downstream 55985 25603761 ~ 25629568 (+) False zbtb4
XM_036987687.1 mRNA downstream 59829 25607605 ~ 25629568 (+) False zbtb4
XM_036987691.1 mRNA downstream 59829 25607605 ~ 25629568 (+) False zbtb4
XM_036987685.1 mRNA downstream 60086 25607862 ~ 25629568 (+) False zbtb4
TU895278 other upstream 205 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 14895 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 595076 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 964295 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1459846 24082256 ~ 24087326 (+) True hacd4
TU895142 other downstream 165221 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 410308 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 865336 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1831556 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1938018 27485794 ~ 27487523 (+) True taf6l

Expression Profile