RNA id: XM_036987684.1


Basic Information

Item Value
RNA id XM_036987684.1
length 9360
RNA type mRNA
GC content 0.53
exon number 28
gene id polr2a
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25586530 ~ 25603298 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCAGAGCGCGCTGGAGTGTAGATCAGGAAAAGAAAGGGGGACAGCTGGTAGTCATAGTAGATAGGAGTAAAGCGTAAATAAATAGACTCCTAAGGCAGTAAACAACGTGGGTTCTCAGGATATCGCTTTCGGAGACATTCCGGTCACCTTTGGCGGTCTGGCCAGAGTCCTGGTGACAATTTAAAGCTATTCCTTCTTACAAAAGCGGCGTGCCGAGGGAGGACGCGTCTCTTTGAATAGACAGGATGCACGGACCGCCCTCCGGCGACAGCGCATGCCCATTGCGCCTCATCAAGAGAGTGCAATTCGGCATCATCAGCCCAGATGAGCTTAAACGGATGTCTGTCACAGAAGGGGGAATCAAGTACCCCGAGACCACAGAAGGAGGGCGTCCCAAACTCGGTGGGTTGATGGACCCCAGACAAGGGGTCATCGAACGATCCGGAAGGTGTCAAACATGTGCAGGTAACATGACAGAATGCCCGGGCCACTTCGGCCACATAGAGCTGGCGAAGCCGGTGTTCCACGTGGGCTTCGTCAACAAGATCATGAAGGTCCTCCGGTGTGTCTGCTACTCCTGTTCCAAGCTACTGGTCGACACGAATAATCCAAAGATCAAAGACATCCTGCAGAAGTCCAAGGGACAGCCCAGGAAGCGTCTGACCCACGTGTATGACTTGTGTAAAGGCAAGAACATCTGCGAGGGCGGAGAGGAGATGGATAACAAGTTTGGAGTGGAGCACGACAGTGAGGACATCACTAAGGAAAAGGGCCATGGTGGCTGCGGGCGCTACCAGCCGCGTATCCGCCGGTCGGGCCTGGAGCTGTATGCCGAGTGGAAGCACGTGAACGAGGACTCGCAGGAGAAGAAGATCCTGCTGAGCCCCGAGCGTGTCTACGAGATCTTCAAACGCATCTCGGACGAGGAGGACGTCATCCTGGGCCTTGATCCCAAGTTCTCCCGGCCCGAGTGGATGATTGTCACGGTACTCCCTGTGCCGCCGCTAGCTGTCCGGCCCGCCGTCGTCATGCAGGGTTCCGCCCGTAACCAGGACGACTTGACACACAAGCTGGCCGACATAGTCAAGATCAACAACCAGCTGCGGCGGAACGAGCAGAGCGGCGCGGCGGCCCACGTCATCGCCGAGGACGTGAAGCTGCTGCAGTTCCACGTGGCCACCATGGTGGACAACGAGCTGCCAGGCCTGCCCAGGGCAATGCAAAAATCGGGCCGCCCGCTCAAATCCTTAAAACAGCGTCTGAAGGGGAAGGAGGGGCGAGTCCGAGGTAACCTGATGGGGAAACGTGTGGACTTCTCCGCCCGAACCGTCATCACCCCCGACCCCAACCTGCAGATCGACCAAGTGGGCGTCCCGCGCTCCATCGCCGCCAACATGACTTTCCCAGAAATCGTCACACCCTTTAACATTGACAGGTTACAGGAGTTGGTGCGCAGAGGCAACAGCCAGTATCCTGGAGCCAAATATATCATCCGAGACAACGGGGACAGAATCGACCTGCGGTTCCACCCCAAACCAAGTGACCTTCACCTCCAGATCGGCTACAAGGTGGAAAGACATATGTGCGACGGTGACATCATCATCTTCAACAGACAGCCCACTTTACATAAAATGTCTATGATGGGGCACAGAGTCCGAATCCTTCCCTGGTCCACCTTCCGAATGAACCTCAGTGTAACCACTCCGTACAATGCTGACTTTGACGGGGATGAGATGAACCTGCATCTCCCTCAATCCCTGGAAACGAGAGCTGAGATCCAGGAGCTTGCCATGGTGCCTCGTATGATCGTCACCCCCCAGTCCAACAGGCCTGTCATGGGCATCGTGCAGGACACCCTCACCGCCGTGCGCAAGTTCACCAAAAGGGACGTCTTCctagagaggGGCGATGTGATGAATCTCCTGATGTTCCTGTCCACGTGGGACGGCAAGGTGCCCCAGCCAGCCATCCTGAAGCCCAGGCCGCTCTGGACGGGCAAGCAGATCTTCAGCCTTATCATCCCGGGCCACATCAACGCCATCCGAACACACAGCACCCACCCAGACGAGGAGGACAGTGGGCCCTACAAGCACATCTCTCCCGGGGACACCAAGGTGATAGTGGAGAACGGGGAGCTGATCATGGGCATTCTGTGTAAGAAGTCACTGGGTACCTCTGCTGGCTCCCTGGTCCACATCTGTTTCCTGGAGATGGGCCACGACGTCACCCGCCTCTTCTACTCCAACATCCAGACGGTGGTCAACAACTGGCTGCTCATTGAGGGTGCCTCTATCGGTATTGGTGACTCCATTGCTGATGCGAAGACGTACCTGGACATCCAGAACACCATCAAGAAGGCCAAACAGGATGTAATAGAGGTCATTGAGAAGGCCCACAACAACGAGTTGGAGCCCACCCCTGGCAACACGCTGAGGCAGACCTTTGAGAACCAGGTGAATCGCATCCTAAACGACGCCCGTGACAAAACGGGTTCCTCCGCCCAGAAGTCCCTGTCTGAGTACAACAACTTCAAGTCTATGGTGGTGGCTGGCTCCAAAGGCTCCAAGATTAACATCTCTCAGGTTATTGCGGTGGTGGGGCAGCAGAACGTGGAGGGTAAGCGTATCCCCTTCGGCTTCAAGCACCGAACTCTCCCCCACTTCATCAAGGATGATTACGGCCCCGAGAGCAGAGGCTTCGTGGAGAACTCATACCTAGCCGGCCTCACGCCCACAGAGTTCTTCTTCCACGCCATGGGTGGCAGGGAGGGGCTTATCGACACGGCTGTGAAGACCGCCGAGACTGGTTACATCCAGCGTCGTCTGATCAAGTCCATGGAGTCTGTGATGGTGAAGTACGACGCCACGGTGAGGAACTCCATCAACCAGGTGGTGCAGCTGCGCTACGGAGAGGACGGCCTGGCCGGGGAGGCTGTGGAGTTCCAGAACATGGCTACGCTCAAACCCTCCAACAAGGCCTTCGAGAAGAAGTTCAGATTTGACTGCACCAACGAGCGGGCTCTGAGGCGCACCCTGCAGGAGGACGTGGTGAAGGACGTGATGACCAACGCTCAGGTGCAAAGTGCCCTGGAGAGGGAGTATGAGAAgatgaaggaggacagagagattcTGAGGGCCATCTTCCccactggggacagcaagGTGGTGCTGCCCTGCAATCTGGCCAGGATGATCTGGAACGCCCAGAAGATCTTCAGGATCAACCCCCGCACCCCCACAGACCTCAACCCCCTACGAGTCGTGCAGGGTGTCCAGGAGCTGAGTAAGAAGTTGGTGATTGTGAACGGCGAGGACCACCTGAGCAGACAGGCCCAGCAGAACGCCACGCTGCTCTTCAACATCCACCTGCGCTCCACGTTGAGCTCCCGACGCATGACAGACGAGTTCAGACTGAGCACCGAGGCCTACGACTGGCTGCTGGGGGAAATTGAGTCCAAATTCAACCAATCCATTGCCCATCCGGGTGAGATGGTGGGGGCGTTAGCTGCCCAGTCGTTGGGAGAGCCCGCCACCCAGATGACCCTGAACACCTTCCACTACGCCGGCGTGTCGGCCAAGAACGTCACCCTGGGCGTGCCGCGTCTCAAGGAGTTGATTAACATCTCCAAGCGGCCCAAGACCCCCTCCCTCACCGTGTTCCTGCTGGGCCAGGCAGCCCGCGACGCCGAGAGGGCCAAGGATATCCTCTGTCGCCTGGAACACACCACCCTCAGAAAGGTGACGGCCAACACGGCCATCTACTACGACCCTAACCCCCAGAGTACGGTGGTGACGGAGGACCAGGAGTGGGTCAATGTCTACTATGAGATGCCCGACTTCGACGTGACCCGCATCTCCCCCTGGCTGCTCCGCATTGAGCTCGACCGCAAACACATGACTGACCGCAAGCTGACCATGGAGCAGATCGCTGAGAAGATCAATGCagGTTTCGGAGACGACCTGAACTGTATCTTCAATGACGACAACGCCGAGAAGCTGGTTCTGCGAATCCGTATCATGAACAGCGACGAGAACAAATTCCACGAGGACGAGGAGGTGGTGGACAAGATGGACGACGACGTGTTCCTGAGGTGCATCGAATCCAACATGCTGACGGACATGACGCTGCAGGGCATTGAGCAGATCAGCAAGGTGTACATGCACTTGCCCCAGACGGACAACAAGAAGAAGATCATCATTACAGAGGAGGGAGAGTTCAAGGCCCTGCAGGAGTGGATCCTGGAGACAGACGGCGTGGGACTGATGAGGGTCCTCAGCGAGAAGGACGTGGACCCCGTCAGAACCACTTCCAACGACATCGTAGAGATCTTCACGGTACTGGGTATCGAGGCTGTGCGCAAGGCTCTGGAGAGGGAGTTGAACCACGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGCCACTTGTCGTTGCTTTGCGACACCATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACAGACAGGACACGGGACCCCTCATGAAGTGCTCCTTTGAGGAGACTGTGGATGTGCTGATGGAGGCGTCGTCCCACGGGGAGAGTGACCCCATGAAGGGTGTGTCTGAGAACATCATGCTGGGCCAGCTGGCCCCCTGCGGGACAGGCTGCTTCGACCTGCTGCTGGACGCTGAGAAGTGCAAATACGGCATGGAGATCCCCACCAACATCCCCGGGATCAGCGTGGCTGGACCCACCGGAATGTTCTTTGGCTCTGCGCCCAGCCCCATGAGTGGCATGTCTCCAGCCATGACCCCCTGGAACACTGGAGCCACCCCCGCCTACGGTGCCTGGTCCCCCAGCATCGGCAGCGGGATGACCCCTGGAGCTGCAGGCTTTTCTCCCAGCGCAGCGTCCGACGCCAGTGGCTTCTCTCCGGGCTACTCCCCGGCCTGGTCCCCTACCCCTGGATCTCCTGGGTCCCCGGGGCCAGCCAGCCCCTATATCCCCTCTCCAGGAGGTGCCATGTCTCCCAACTACTCTCCCACCTCCCCGGCCTACGAGCCCCGCTCTCCTGGGGGATACACCCCGCAAAGCCCGGGCTACTCCCCAACCTCCCCCTCGTACTCCCCAACCTCCCCTTCTTACTCTCCCACCAGCCCCAACTACAGCCCCACCTCACCCTCCTATTCACCCACCTCCCCCAGCTACTCCCCGACCTCCCCCTCATACTCCCCTACGTCCCCCTCTtactcccccacctccccctcttactcccccacctccccctcctactcccccacatctccctcctactcccctaCCTCCCCCAGCTACAGCCCCACGTCTCCAAGCTACAGCCCCACATCGCCTAGCTACTCCCCCACCTCACCCTCTTACTCACCTACCTCCCCCTCTTATTCACCCACTTCACCCTCCTactcccctacctccccctcctattcccctacctccccctcttaCTCCCCCACCTCTCCAAGCTACAGCCCCTCTTCACCCAACTACACCCCCACCTCGCCCAGTtactcccccacctccccctcttactcccccacctctccctcctactcccccaCCTCCCCCAATTACACCCCCACCAGCCCCAACTACTCCCCCACTTCCCCCTCTTATTCTCCCACCTCTCCGTCCTACTCTCCCTCTAGCCCGCGGTTCACCCCCCAGTCGCCCACCTACACCCCCAGCTCTCCCTCCTACAGCCCCAGCTCTCCTTCCTACTCACCCACCTCCCCCAAATACACACCTACGTCCCCCTCTTACTCGCCCAGCTCTCCAGAGTACACCCCCACCTCCCCCAAATACTCCCCCACCTCGCCCAAGTACTCTCCGACCTCTCCCAAATACTCACCCACCTCCCCGACTTACTCCCCGACGACCCCCAAGTACAGCCCCACGTCGCCCACCTACTCCCCCACCTCGCCCACCTACACCCCCACCAGCCCCAAGTACTCCCCCACCTCCCCAACCTATTCCCCAACCTCACCCAAATACTCTCCCACCTCCCCCACCTACTCGCCCACTAGCCCCAAAGGGTCCACCTACAGCCCCCTGTCTCCGGGCTACAGCAACCCCTCGCCCAGCTTCACCCTCACCAGCCCGGCCATCAGCCCAGATGACAGTGACGAGGAGAACAACTGAGGGAgccaggaggaagagagggggctgAGGAGCCTCTCACTGCCCTACTCAAAGCCCCTGGACTGGGGCTGTAATACTGAAGGATAGCCCCTCTGCTGGTAGTGCTAGTGGTTTGGCCTTGGAGAGtcatgacaaaaaaaaaccctggGGGTCCCACTtgtgaatttattttattttggggaCCCTCCCTCGGACCACTGTACCCCAGCCTCTTCCATCTCGGGGGAGGGCCCCCTAAAATATTTACTACTATGTATTTGATAGACTTGAACTGTTTAGCAAGGGGAATAAGGCTGCCTTTTGAACTACAcattttgttttggtttttaatgtTCACGCGGGTGTTGAAGCAAAGTTAAGAACCCAGGAGAAAGCAGGGAGAGAGCGATGTGGTTACCACATTGACAAAAACGTCCCTCTtttcaacccccccacccccctgttTACCTGTACCCAGTCTTTCTCTGATCTCTTCAGTGTTGATGTATAGTTGTACGGGGGAGCTCGAGTATTGCCAAAAGCCTTTGAAAAGCTAccagtggattgtatttatctcCTTAAAAAAGCTTTTAAGCTTCCCCCCAAAAAAAGAGAAACTAGAGGACTTGAGCTGATTCTTTATTGCATATTTTACTAAAACGTACATTatctttagttttttttttctaaATGTAAAGTTGTTGCTGCCAGTTTTGGTTGGAAGAAAAAAGAGcggatttattttttttttcatttttatgtcAGAAGACAGGCCAGAGTTGAAGGAGATGAGTTGACCGGAATTGGATTGAACAGAATTGAAACACTATTACTAATCTGCAGTTCAGAACAGTGGAGTTCAAGTAGTACTGGAACGGGGTTGCTTGAATACTGCAGGTGAAAAGAGTAGTTGTATTCCTTGCAGCACTAAGTACAGGGCTGCAAATGAAGATCGCCTAGGACGGGAGAGGGTCAGGCCAcagatgctgagagagagagcgactggTGTACTGGGCAAAATATGCTTTCCGTGGAGATGGTATTGCCATTTTTTAACCTCTCCATGACGTTCCAAATAAACCCTTTCTCCCCTCAACCCTCCCCCACCTAAAGTCGAACAAGAAAGATGTCAAAACACCCACCAGCATCCCTGTACCCTTCACCGTTAGATGAGTTGTGTTCAACagcaaaaaacttttttttttttttttttttcagcaaaCCACTTTTTTAAAACACTGGTCAAATTTGGGTTTATGGAAGACTTAgtaataatatctgacaattGTCATTCTGTTTTTTAAGAGAGAATGGAGTGTTTATGGGTGGACGAGGGATACTAGTTGGTTGGCGTCGCTGCTTTTGTCATTGTTTCTGCATGAGTAGCAACCTGTTAATACATTTTAATCTTCCCGTTTTAAGTTGAAGATCTCTTATTTGAAATCCCTCCCACCTTGTTCCATAATTCTAATTAGGAATTGTAAATGAGTTCTCTACTTTACTTAGTTTGGACtcgctcataaaatgtatttaagagGGAAAAGTACTATTATTCGTCTGTGTGAATAAGAATGGAGAAATTCAGATTCAATTTTGTTTTTCTatttcctgttttttttgttgcttctgGTGACTTTGTAAGAGCTGTTTGCAAAGAGGGTCTGTGTTCAGGTACTTTGGATGAAGGGGCAGGGGACGGAGGGGAGTAAGTTAGGTTTCCCCGTGATCTCTTTTCCATTCTGTTTCCCAATGGCTTTGTTCAGTTTCTGCCACTCCGGCTCGAATTTGGGCCAAGATGGCCACCGCATTCTCATTTAAAGGGGAAATCAGCAGTTTCTACCTCCATTTTTGGATACATAAAttgatatatacccattgatttttgaagaatataacttataaataaaTGCTGCGTTAGCtaagttcaactgtcgtaccctgCCAGAACCCAAAATATGAAACTTaacattgtaaacaaacactctaTAGCCTTAGCATGATTAGAactaattttgatatcatggatggtcagtccttgcatccatttctgtctttgaatttgagtggttacatttctccagccccagctttttaccgaaacggTGGTGGGGAGGACGctttgtttcaactgctgattgctgctttaaGATATAAAAAGAAATGTTGCATGCAGTCCATTTGTGACGCTTCATAGCCTACTGTAAATGTTACAGCTAAGTGGCTATACTATGGTTCAGGCAGAAAATGGGAAGTTTAGGTTGACAGACAGGTTCATGTTCAGTTTAGTGTTTGTCAGTTACGCTCTTGGACACTGGAGGGCGACATAAGCCCTCGTTTGGGTTAACAAACCTCTCGAAGTTTCAGTTCAGTGATTTTTATGAGACCAGACATTTCAGAGCACTTTTGGcctctataaccctctacccACTACATTAGTGTGACAGTGAATCCTTGAAGATTATGAAAACCACCAAGCAGACACACTCTGCGTTTGCTTCCAGGTGCTCTTACACTTTACTAGGCCTAGTTTGATAAAGGTGATGAGTGTTTTGATTCTCGTGCCTGTTTGACTATGGAACATGGATACTCCATCCAAGCAATACGACAAGTTTCCCCCCGACTTTTGATTGGACTAGCTgggtctcctccctccccttgttCATCCACAAGTGATCCTGGTTGTTTTTGAAATCGATGTTTGTCCTTTTTCTACTAATGTTCGTACCTGGGTTGGGGGGATTCTATGCCTGTAGAATTCCATGATGGGACTGGAACTTGGATGTGTTCTGAATTTGTCACGATTTTTATCCGGTTCGTGGTCGGGAACGTGTTTGCTACAACTTGTCCTGTCTACCAAATGTGTTTTCAACAGAAGTGATTTTGAATTGACTGTACCACCTGCAATGAATAGAAGTGTTGGCAATACACTGTTGAAATTCATGCAGTTGGTCTCTTCCATCATCGCCTCATGACATGGTGACTTTGTCCACTACCACCATATTCCATTGATTTACCTGTGTGGTCCAGTCAATTCAACATACCAGGACTCCCATGTGTGTGTCAAAAGAGAGGGTTTTCTTGAGTTGAAAGACTGGACAGGGTGTCTTGGGAGTAGGAAtgtttaaattaaaaataaattgcCACTGTATAGATATCAATCCAATATCTCATTCTctgtatcttttttttttttttttttgacttgagaaaaaaataaaggttttactATA

Function

GO: NA

KEGG:

id description
K03006 RPB1, POLR2A; DNA-directed RNA polymerase II subunit RPB1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896779 lncRNA downstream 16237 25569983 ~ 25570293 (-) True G787405
TU896758 lncRNA downstream 63018 25522038 ~ 25523512 (-) False G787386
TU896760 lncRNA downstream 63018 25522038 ~ 25523512 (-) True G787386
TU896673 lncRNA downstream 100291 25485979 ~ 25486239 (-) True G787303
TU896672 lncRNA downstream 101879 25484394 ~ 25484651 (-) True G787302
TU896795 lncRNA upstream 28811 25632109 ~ 25632375 (-) True G787421
TU896684 lncRNA upstream 32331 25635629 ~ 25641117 (-) True G787313
TU896798 lncRNA upstream 41012 25644310 ~ 25644593 (-) True G787424
TU896801 lncRNA upstream 44935 25648233 ~ 25648605 (-) True G787427
TU896806 lncRNA upstream 57441 25660739 ~ 25662079 (-) True G787432
XM_036987683.1 mRNA downstream 4282 25570616 ~ 25582248 (-) True LOC110531827
XM_036987680.1 mRNA downstream 5683 25570616 ~ 25580847 (-) False LOC110531827
XM_021615267.2 mRNA downstream 21639 25554016 ~ 25564891 (-) True LOC110531826
XM_021615262.2 mRNA downstream 102309 25451118 ~ 25484221 (-) True LOC110531822
XM_021615261.2 mRNA downstream 142279 25433815 ~ 25444251 (-) False LOC110531820
XM_021615280.2 mRNA upstream 109673 25712971 ~ 25732992 (-) False LOC110531833
XM_021615281.2 mRNA upstream 109673 25712971 ~ 25742689 (-) False LOC110531833
XM_021615282.2 mRNA upstream 109673 25712971 ~ 25742721 (-) True LOC110531833
LOC110531837 mRNA upstream 180635 25783933 ~ 25785181 (-) True LOC110531837
XM_036987709.1 mRNA upstream 262692 25865990 ~ 26218916 (-) False LOC110531840
TU896757 other downstream 63018 25522038 ~ 25523512 (-) False G787386
TU896529 other downstream 228714 25355354 ~ 25357816 (-) True LOC110531812
TU896576 other downstream 282839 25294189 ~ 25303691 (-) True trmt44
TU896572 other downstream 295059 25290915 ~ 25291471 (-) True G787211
TU894726 other downstream 621256 24963072 ~ 24965274 (-) True G785578
TU896721 other upstream 272137 25875435 ~ 25894404 (-) True G787350
TU896702 other upstream 279438 25882736 ~ 25930052 (-) True G787331
TU896717 other upstream 322066 25925364 ~ 25955174 (-) True G787346
TU896731 other upstream 854402 26457700 ~ 26458029 (-) False LOC110531840
TU897562 other upstream 1318614 26921912 ~ 26922402 (-) True G788162

Expression Profile