RNA id: XM_036987685.1


Basic Information

Item Value
RNA id XM_036987685.1
length 9301
RNA type mRNA
GC content 0.55
exon number 3
gene id zbtb4
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25603761 ~ 25629568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtatcaacacaaactcacttcattgacaacttccttcacaacagctcaacaaaaacaaaaaaacagctcTGCGTTGCTCCGCGAAGCGCAAGAATTAAAATGCCCAGACTTCTGCAGAGACCATATCACGGTAAATGCTGCACGACCAATGCAGACGTCAGAATGACCACGCAGCCCCttaaatgagagagggagaagcgacACAACCAGGGAGAGGGAGCCGTTACTCCACGTTGACACGAGATTCTGGACCCTTATTTAAACATCCTTCCTGTCTGCGACGGAAGGCCAGAGCGAATGGCCGCCCACCTGACCCCTTTGTGGAGCGACTCCACTTCCTGTTCCCCTTTTAAGACGACCCCTGACCTTTAAACCTGAGGTCAACACCTCTGGACTTACCACTTAAGCAGGTTTTGAGGGCTGGTCATGGTGCCTCAGCCGGAGGTGTGCGACCCTCTCCACGCGAGCCTCTTCCTGCTGCGCCTGAACAAGCAGCACCTGGCCGCCGGGCCCACCCTCTTCTGTGACGTCAACCTCGTCGCCGCCAGCACCGCCTGCAGCCAGTACTTCCGCCAGCTGCTGCTGTCGACGTCTTCCCCACCGCCTTCGTATCCAGTATTGGACACCCGTCATCAACCCCCTCTTCTGGGGGGCTGAGCGAGTCCTGGAGCTGCCTCACCTCCAGTCCAGAGTGCTGTCCAACCTGCTCGACTTCATCTACACCTCCCACGTCCTCCGCCGGGACGACAAGGGGAAAAGGCTTCTCTCAGAGGTGGGCCTCAGCCTCGGGGTGCCCTTCTTGACCCACCTGgttaaagaagaggaggaggaaccaGGGGAGATGAAGGGTAAAAGCAGGCAGGGCCGAGGAGGGGAGGCCATGATGGAGGACGGGGCATGCGGCCCAGAGAACGCTAAGATCACCCTCAGCTTCCCCCTCAGTGCCGCCCTGCCCGCCGCCCTCACCGTTCACAACCACCGCTCCTCCTCGGCCATGTCCTCCCCTCGCTGCCGACACTCCTCCTCGGGGTCCAATGAGGGGTCGTCATGGAAACTGGCCGCCGCCGCCACCACGGACAAACGGCGGCCGTTTAAACAGCCCCGACATGACAGCTCTCcatgctcttcctcctcctcccattcctcttcttcctctcccatgGATCTTACCGCACTGGTCAAAAAGGACACCAAATCCCCCCCACCTCTTTTCAAAGCCGGTCTGGACTCCCAGTTCCACAGGTTCACCCCTAGGTCCTCCAATGGGCCTATAGTGGGTTACCCAGGGGAGGGTCACAGACTGACCAATGGCACAGCCTCCCCCTCAGACACTGCACAGATCCTGTTCAACCTGAGCGCCGTGGCCTATCAGAGCCAGGGGAGGCAGggcacagagagaaaggagaaaacaGGAAAATTAGGAGGGAGGGTGGGCAGCCCACAAGTTGGACCAAACCTCCACCCGCCCACCCTccaccttcctcctcttcctcacccttcctcctctttcatcccaccccctcttcctcctcactcctcctccacccccccagaTGGCCCCAAGGCGGAGCTGATATGTGGGGTGTGCCACCGCCTCTTCAGCTCCGCCTCGTCTCTCACGGCCCACATGCGGCTGCACCGTGGTGGCCGGGCCCTCAGCTGCCAGCACTGTGGCAAAGCCTTCATCCACAACAAGAGACTGCAGTCCCACGAGGCCTCCTGCAGGCACGCTCTGACCCCGGCTATCCCCTCTaacctcccccttctccccatccaGCCAAAAGAGGAGCCCCTGGAGGAAGGGGAGGTTAGGGTGGAGGGTGGACAGATTCTGGGGGCAGGCGAGGAAGATATGAAGCCTGGAAAAGGGAAGAAAGGGCGAGGTCTCCTGGTTCGACACGAAGGCGACGTGTCCGAGCTGGTGGGGGACGAGGACCACTTCGTCAAGGTGGTGGACGGCCACGTCATCTACTTCTGCTCGGTGTGCGAGCGCTCCTACATGACCCTGTCCAGCCTCAAGCGCCACTCCAACGTGCACTCATGGCGCCGCAAGTACCCCTGCCACTTCTGCGACAAGGTGTTCGCCCTGGCCGAGTACCGCACCAAGCACGAGGTGTGGCACACGGGCGAGCGACGCTACCAGTGCATCTTCTGCTGGGAGGCCTTTGCCACGTACTACAACCTGAAGACCCACCAGAAGGCTTTCCACGGCATCAGCCCGGGCCTCATCTCCAGCGAGAAGACGGCTAACGGCGGCTACAAGCAGAAGGTCAACGCGCTCAAGTTCTACCGCCTGCTCCCCATGCGTTCCCAGAAGAGACCCTACAAGACTTACAGTGACTCCCTGGCCAATGGCCTGCAGCTGCCCCCTTCCGACCCCTCTTCCGTCCCTCTGCCCCTGGACTGCAGCCTGCCTGACTCCCTGGACCCCGGTGACCTGTGCAGCCTCATCAGTGGCTCTCTACCCAAGGGTGTGAAGCCAGACCCTGAAGAGTTCCCTGCCAGTTTCCCCCTCACAGTAGCCCTAGAGCAGGGAGAGATCCGGCTCCCTTCCCTAACAGGCATGGCCCTAGGGAGAGTAGCAGACAGAGAGCCAGCATCCGAGAAGGTAGGTAGTCGTGGCAGCAGCTCCAAGGTATCCGTTGGCAACAGAGTTAAAACTCCCAAGGTCAGCGGTAGCCCAGAGTTGGGTTTGTCCTCCGTGATCACGTACGGACACCCCAAGCCATCAGTCATAGTGCACGGCACAGCAGTGTCATCCGTCATTGTCCATAGCAACCAGGTCACCTCCGGGGGTGGGAAAAGCCCCCTGAGCAGTCCCTCCTCTGAATCTAGCAACAGCCAGACACTCCTCCCCAAGAGCAGTGCAAAGCCTGTTAAAAAGCATAGGGAAAGTACGGAGAGCCATAGGAAGAGAGCTAAATTAGTGGACAGTTCAGATGTCACAGAGGAGTCGGAGAGGAGATCAGAGACGGGTAGGTCCCATCATAAGTCCAGCAAGAGTGACGGCTCCTCAGCCAAACAGTCGTCAGAGGGCAAAGGAGCCGGGCCGCTGTGTCAGATCACGGTGCGGATAGGCGAGGAGGCCATGGTCAAGCGCAGTATCTCCGAGACGGACCTCAAGAGGGACAGGAGCCCCCCTCCTTCCAAAGCCAAAAGGACATACTCCTCCCCACTGGAGACCAAGGAACCTCGCCactctcaccaccaccaccaccatcaccacaaacACCGCTCCCATCGCAGCTCGAGCACCGGAgccgagggggagagaggaggagatggggagagcaGGAAGAAAAGTCCCATAGCCCCGGGCAAGGTCAGAGAGTACTACTTCCGCCAGGAGGTGCGCAAGCAGGGGGAGAGTGAGGACGATGAGGACAACCTCTGGAGGCCCTACTACTCCTACAAACCCAAGAGGAAGGCCCCGCACATCCACAAAGCAAAGAACTGGCAGGCCAAACTGCACTACAAACGCTCCCTCCGGCTTATGAAGCGGGCCGAGGGAATCGTGGACCATGTAAATAAGGAGGCAGGGGAGCAAGACGAGGAGGATGGAACGATGGatgaggtggagggggaggtggaaggTCACATAGAGCAAGAGAAGGGAGAGGTACCTGAATCCCTCAGTATTTCCCCTATACCTTcgaaagacaaagagagggaggaagaaatcCACCTTAAGACCACTGATCCTCCCCTGgcttccccccaaccccctctgGCTACCTCAGTCTCCCCTATGGACACAAAACGCCGGCCTTGGTCCGATGGGAGCGCGTCGGAGTGCGATACGTGTGGCCGCTGGTTCTCCAGCTCCAGGAAGCGGGATAAACACGAGCTCAGCCACCTGCTGGAGTTTGTGTGCCTCCTTTGTAGGGCCCCTTTCCCTTCCAGGGACCAGCTGGAGGATCACCAGAGAACTCGGCACCCCAAAGCCCCCGACCCCCTGTCCGTGCCACCCCGAGCGGGACCTCAGTCCAGAGATGAGGGTGTGGAGAGGGAGACTAAGCTGGCAGAGGTAGACCGGGCGAGAGAGAGGGTTATACTAGGGAAGGGAAGTCCAAGTCGCCTAAGCAGGAGGTCGTTGGCGAGACACACCTGTTCGCAGTGCCATAAGGTATGCAAGACATCCTCGGCGCTAAACCGCCACGTGAGGCGCCACGAGTTAAGCAGCTCcccggagagagaaagggaggagaccCAGCCAGAGCCAAAAGCAGCAGCAGAGACTACAATTAGCACTGCTAGCAAAGACCTCGACACCATGAGTGGCCATGTTCCTGTTGTTCAGTCTGTCCCAGCTATCAGCTATTCTGTCCCAGAACCACAGCATAGCAGCGAGGGCATAGAGGCACAGCAGTGCGCGAGCCAGCCTAGCAAAGTGAAAGCAGAGCACCATATTCCAACACTGTGCAGCAGCCCTGAACTCAATGAACTCGCCACTCCTGTTCCTGACCGAGAGCCCAGTCCACtgattattcagcccccttcagAGATCCCCATGGCCGATATCCCCGATTCTAACAGGCccacaccctctccctcctcctgcacCTCGCCCCTCCAGGGTGTGCTGGTCATGAGCAGTGGAGCTGAATGTCTGGACTACCGGACCCCCAGGAAGAGGAGTCTGGAGGGGCAGAGTCACAGGAGGACCAGCCCTGCACCTGTCACCGGACCACCCACCGCTTTTCTGAACATGCACCTGACCTCGCAGATGAGAATCAACCACACTGCTGCTCCTCCGTCCGTTGCTATGACAACAGTGCCCCTCCGAGGGGTCTGTGGCGTGAAGCGGGAGGGAGATATTGTGGAGAAAGGACTGAGGCAGGGATGTGGGATGGGCCTCTTCCATCATGCTGGTTTTAAGGACTCACCAGTGGCCCAAGATGTCAGGGTCCTGCCCTTGTCCAGGAGCCCCAGTCCCAACCAAGCACAAGACCTGACCATGTCCTCAATCCTAgccagggaggtggagagggaaaggcagagagaatgggagagggatatggagagagagctggaaagggggaggcagagagaaagagaaagggatatggacagagagctggaaagggggaggcagagggagaggaatatGGACAGAGTGCTAGAAAGGGAGATgcggagagaaagggagatggagagggttcAGCAGACTAGGGGGGCATCTCACCCCCCACCGGAGCAGCTCAGAGACAAGGAGATGATCCTCCTGGTACCCAAAGAGGAGCCAATTAGTCCCGCACCGTCCCCTATACACACACCCATTCAAACCACTATTAACAACCGTCCCTTGCAGAGGCGGCCCACCGTGTCCCCATGCCTCTCCCCCACTGCCATGGACCTTCTGATGCAGGCCAACCGCCAAGTTTCCCAGTCCATGTGTGGCACACGGGGCCCCGAGAGGCTTCAGTTGCCCACTGGGTCAGTCGGTGGCATCGACCGCCCCTCGGCCCACGCCCTACTGCTCCCACGGGTCCCCCCACTGTCCGAGGCAGAGCCCCAGGGCCACTCCCCAGCGCCATCCAGAGACCCTCACAGAGGGGAAGTCACTGCCAGGGGATACCCCATGCAGGACTACCCCCTGCCCCTCATCGTCCAGAGCGGCTACTGCTCTAGCAAGAAGCAGGAGGACAACCTGCTCATGTCTTACCCAACCGGGCCTCTTGCCTTCGGGCCGTTGGGGAAGATGATGCCTACCGGGGACCTAGCCAAACTGCCCTTCTACCCCGACCCGTACCATCTGCTCTATGGGCCGCAGCTGCTGGCCTACCCCTACAACCTGGCCTCCCTGCCCATGGCTCTGAACATGATGTCCCCTGGGGACGACAAGGTGGCGCCGCTGCCCTTCCTCCCCGCCCTCTTCAACTACGCTGCTGCAGCTGGTCCCTACACTGGCATGTTGCCACACCACCTAGTGGCCAACCCCAGCCTCTACAACAGCGGTGGCGGCAGCAGCAGAAAGCAGCGGGACAGCAGCGGCGGCGGCAAGCCGTAGAGGTTGTAGAGAGAAGTGACCCttttattgtatttttaaaaGTGGATGACCAGGCCTGTGGTTGGAAGAAGGGGTGGAGTCGTCTCCTTATGGTTACTGAGTCCACTTGCACAGTCCCCGGCCTCTCTTTTGTGAAGTAGCAGTCAGAGCCTCGGCGTTGAATCGGCAGAGAGGATGAATGGGAGGAGGATGAGTGAGGAAAGAAGGGACACATTTCATCATTACAGGCGgatatcctcctctcctttcctctggcTTCTGTTCTCATGTCTTTCTGTCGTACTAGTTCTGCACTAGCGCTTGGATAATTGTCTTCTCCGACTCGTTATGatatctataataataataataataataacagggtGTTTCCCTCTGCTTTCCTTTACAGTGACTGCATAATGCTGACCACGAATACACCTCTCTAGGGGGACGCTTTTTAGGGAAGGAAAGGGATCAGCTTGAAATGGCATCAAACGAGTGTGTGGCGTGTGATCGCTCATGTGAACGTGTGCTCCAGGTGTTTGTGGGAGCTGTGCGTGACCTGTATGTAGGAGTTATTCAGTTGGGCACGCTGGGGGTTGGCTTCTGTTCGCCTGGTGTGTCTGAATGCGAGCGGCTGTACGGCTGCCATCTGAGCGCTGATCATTCCACGGGGGTTCTGTGGTGTTAACAGCATTCCAACACTAGACTAGAGCCCTTTTATAGGTCCGTGCATAGTTCAGTAGAAGGAATTATTCCGTTTCCAGTTCCCAAAGTAGCAATGCTAGCTAACCGTATGGATGGAGTAGAGTCTGTACTTGAGACAAATGGCAGATCTTGTGGGCTTATGTTACTATAGTGGCCAGATGAGTCTGCTTAGGGGTTCATGTTAGCGTTTACCTTGCGCAAAACAACTGCAAAATGTTCCTAtaaaaggggggtgggggggggtggaagACTTGACAAGTCTTGTAGCTGATCTGTAAATGTACTTTAGCTGTAGCTGACCACTGGGCGAGAAACACAGGTTAGTGTAGACCACGCACTTCCTATTCTCCTTGTACTCATCTCATCTCTTCCAAGgtttgaaaaaaaacaacaacataagaAATAGGTTGATCTTTTAATCTTCAGTGACCCTTTTCCTCCCCCTGATGCCTCCTGGTGTCCAACAAAGACACAGTCCGTTTACTAGGCCCGGTTCGAAGAGCGGGGGAGTGTATTAGGGAAAACACAGAGGGGTGGAATCAGGGCAGGGCAATTCCTGTAATATCTGgaaagagcgagcgagggagatTTAAAAGAGAACCACAGAGGCCAGGCGCACCTAGGTCAGTACCCTCGACGGAGCTTCCGGGGTCAAATCAAAATGACCCCTCTTTACTGAAAGGACAGAAAAGGACAACGGAAATGGAGTCGAATGGCGCCACAGTGGGGTAAAACAGCTTTTCGTGTCCCAATAGCTCCTCTCTTCTGGGGCAGAGAAGAGAAGGGTGACGTCACCAGCCCCTTAAAGCCGGTGTTGTAGGGCCGGGCTTAGCAGCATCCATTGTGCGGCTCGGAGTTTCCCCAGATGTCGTGTGGGACTTATTCTGTAGTGTCTTTCTCTTGTACGTTACATTTacatgtgtttgttttgtttgactcTTATATCACCTTTTGCTAGCGTGACAGAAGTGGCTTCAGCAAATGAAAGGGGTTTTGAGTACACTTATGAATATGAATGTCATTTTAGGTTAGGTGCATAAAGTTCGATGGGGTTCATTATTTTTCCGACTTGAAAAATAACGCGTGGAGAGCCGTTATGAAGTCTGGTATGCGTATTTACAGTAGTCCTAGGAACATGTCAAGAAACTTAGGTTCTGTATCCACAAAAGCATGAGCAACACTCGCTTCAAAACCGTTTTGTATTATTCTCGATATCCAAAATCTCTCACGTTTTCCTTCCCGTGGCTCCTCATCCTCTGtcgtcccccccacccccccactatCTCAGCTcaccatctctgttttgtcttgGTTTTGTATTTGTTCTGCAGTATAACCCCCTAAAAACAGAGCAGGTACCACGTTTATTTCTCACAATCCGTATGGGAGCTGTCCAATTATCCCCGTTCCTCCCCAAACGTGCACACTTTACACAGCCTCTTTTTGGAGTGTGTATGGTGTCTGTGTGCGACCAAACCGCTGCACTGTTCGTTTCGGGCAGGAGGACGGAAACACCGACTGCAGGGGCTCACGGCCTCGACTTGGTTGTGGTTACAagccttctctgtgtgtgtgtgtgtgtctctctctctaagcgtgtgtctgtatgtagcgcaggaggttggtggcaccttaattggggaggacaggctcgtggaaACGGCTGGTGCGGAaaaaatggaatggtatcaaatacatcgaGCACGTGGGCTCCATGTGTTTAAAGCCATGCCAATAGCTCCTTTCCAGCCAATGTTATGAGCCGTCctgccctcagcagcctccactggtatgcgtgtctgtatggggggggggggggggggggggaaccgaAAAGCATCTGCCTCTTAGCAGCATATCCCTCGAGGTACTGTATATGGACAGCCTGTGTTTTTTTTTCAATGGTTTTCTTCGAGCCCACCCTCTTCCCTACCCAGCTGTAAAGACTCACCATACTGTACCCATCGAGGCCAtttcactagatagacatgtttTTGtttcaaaaaaaaacatttcttctCACATTTTTGCCATCATGGTGATTAATCACTGACCCAAACGCCTGCAAATAGACATAGAGTGAATTCTGGTGACgatatacatatttatattatgtcGAGTAAGTTCAAATGAATTGTGCCTCCGCTTCAGTATATTTAAACGTAGCTGTATTCAAATGGTTTGGATCTTCCAGATTTCAGACAAGGTGCCTTTTTTTCTGGCTTAAGAAATGGAAACGATACATGGGTGAATTTATCAAAATGGCAAATGACCTGGAGAAAAGTTGTGGCTTAATGTGCTATGAAGCTGGTCATAGTTCTAGGGGTGTGGCTAAACTGTTTGGTATTGTGTATGTTTAGGTAAATACTGTGCCATAGTTTTTAGAGTCCACAAATACGTTATTGTTTGGTTTCTTCTTCAAATATATGAAATGTTTTAATGTTGCCTGAAAACTTTGTCTGGATTTGACACAAAGGCTTGTAGCCACAGCTCTCCCAAAAGTCCCTTGTTTGTTTCTTTAACACTTTCCTCTTGTTCACCTCTTTCCCACTCTTTCTCCTCGCTACAATCAAACAAATAAAGTATTAACCTGATGACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895298 lncRNA upstream 30563 25574195 ~ 25577299 (+) True G786109
TU895280 lncRNA upstream 60086 25547172 ~ 25547776 (+) True LOC118966182
TU895276 lncRNA upstream 64210 25537524 ~ 25543652 (+) True G786089
TU895249 lncRNA upstream 121217 25486412 ~ 25486645 (+) True G786068
TU895196 lncRNA upstream 197482 25408603 ~ 25410380 (+) True LOC110531817
TU895330 lncRNA downstream 12244 25641812 ~ 25642049 (+) True G786134
TU895153 lncRNA downstream 31113 25660681 ~ 25662373 (+) True LOC110531830
TU895362 lncRNA downstream 114732 25744300 ~ 25744526 (+) True G786166
TU895138 lncRNA downstream 129906 25759474 ~ 25762167 (+) True G785958
TU895367 lncRNA downstream 134700 25764268 ~ 25764485 (+) True G786171
XR_005053449.1 mRNA upstream 59962 25547105 ~ 25547900 (+) False LOC118966182
XR_005053448.1 mRNA upstream 65826 25540981 ~ 25542036 (+) True LOC118966181
XM_036986934.1 mRNA upstream 71689 25532430 ~ 25536173 (+) True LOC118936682
XM_021615266.2 mRNA upstream 75170 25525371 ~ 25532692 (+) False LOC110531825
XM_036987679.1 mRNA upstream 84345 25508544 ~ 25523517 (+) True LOC110531824
NM_001124237.1 mRNA downstream 6114 25635682 ~ 25641068 (+) True shbg
XM_021615273.2 mRNA downstream 23695 25653263 ~ 25662149 (+) False LOC110531830
XM_021615274.2 mRNA downstream 23737 25653305 ~ 25659084 (+) False LOC110531830
XM_021615277.2 mRNA downstream 34910 25664478 ~ 25678818 (+) False LOC110531832
XM_021615279.2 mRNA downstream 35209 25664777 ~ 25669455 (+) False LOC110531832
TU895278 other upstream 60895 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 75585 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 655766 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1024985 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1520536 24082256 ~ 24087326 (+) True hacd4
TU895142 other downstream 83429 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 328516 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 783544 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1749764 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1856226 27485794 ~ 27487523 (+) True taf6l

Expression Profile