RNA id: NM_001124237.1


Basic Information

Item Value
RNA id NM_001124237.1
length 2155
RNA type mRNA
GC content 0.48
exon number 8
gene id shbg
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25635682 ~ 25641068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTGGACAAATCGCTGTGAGGTTCTGGACACTGGTAAGCCTACTGAGGGTCACGGGTCTGAAGAATGGGCTCGTTAAAGACCCTGTCAGGTGGACTGCTGCTGGGTTTATGCCTCACCTTGCTGGGATGGGGAGCTGAGGGACAATGGAACGGACACCCCAAGAAGGAGATATCGGGCAGTGGCCCTATCAACCTAGGCCAACAACAACGAGGCACCTGGTGGCCCCTGATGCAGACCAGAGAGAACCTGACAGAGGTCAAAAGCATCAAGTCCATGTTCCAGTTCCGGACGTTTGACCCCGAGGGGGTGGTGTTCTATGGGGacaccagggagggagaggactgGTTTGTCCTGATCCTCAGGAACGGCCTCCCTGAGATGCAGATCGGGAAAGCAGACATCCTCGTCAGTGTGCAAGGGGGACCCAAACTCAATGATGGCAAGTGGCATCTGGTGGAGATCAGTAGCCAGGGGGATTTTGTGGTGCTGGAGGTGGACGGCCAGAAAGCGTTGGTGGTGGGACTGAAGTCCAAAGAGACCATGGAGGTTCTGACAGGCCAGATCCGCCTCGCCCTCGGGGGAATCCTGGTCAGCGTGGACAAGCTGTTCCTCCCGTTCCAGCcagagatggatggatgtatcCAGAAGGGGAACTGGCTAAACCTGAGCACCCCCTGGGAGACAGAGTTGATTGGGGAGCCCTGGCCCTGCTACCAGAACATCCAGCCAGGGAGCTATTTCCCCGGAGCAGGACTGGCTGCATTCAACACCACAGACCTCCCTGGCCACcagacagaggagggtgggatTACTATTGATATCCATGGAGACTCCACTAAAATGGAAGGAACAGTTCTGAGCTTGAACACCCCTGGGCAGGAATTGCCCACAGTAACAGTGAAAATCAACAATAACCCAAAGAAAGTCATACTGACCATCCTCAAGCGTGACACCATCACCGAACAGAGTTTCAGCAGACTGTCCCTAACCCTGTTGAAGAATCAAGTGAACATGGACATCGATGACACGCACCTAACATTTGAGATCGACAGTATACCTGACTTTCCTAGAAGCTGGAAAGAGGGGATGATCCTTGCATTTGGGGGGCTTCCAGGTGATGGAGTGTCCTACAGTAGCATCCAGTACCTGAAGGGCTGTCTGGAGAAGATCCAGGTCCAGGGACAGGATGTGGATCTAGACCGGGCGCTGTACAAGGACCTCTCTGTTTTCTCCCATAGTTGCCCCTCAGAAGTCTGAACCAAGGCTATCCTGACAGATCAGATCTGTGATGACTGTATTGATGTCATTTATCTCCATCAATCGCCCTTCCCTGGTCGCATAAACCTAATTACaaatccccccctcccccatctgcATTTTAACAGGCCCAGTCAGTATTCCTGTACACACAGTCCTAATTTTAACCATGGCTAAGAGAGATTtgaccatagaattaggaattagaataatagaatgtaaaataaccttcttatgatggtccaaaggtcagccatgttggtgagggagttggtcaaccatggtttacCAGTGCTGTGATAATATGTATAATAATGAATGTGATGAATTTATCTGCACAGTAtgtgtgttagctagcaagccagccagttttagaggaatgattccATGAAGTGCTCTTATTAACTGCCAATGTGgcaacattccattcaaacaataCAGTCAATCCACAGTCATACACTGGCTGAAGTCAGTTGATGATAGgacttagacaagttgtaaatgcaagAAGTACTGTTATTGTATGACTATATTATATGACAATATTGTAGGTTGACTATAATTTTATTACACAATTTCTGACACATCACATGCCTTACTTTTATGTTCCTACTTAAGCAAAAGCAGGAAATGCATCCCCTTTGactctactgccattcattccaattagactggttttgGATTCATTCCTGACCAAGATCGCTGCCATTTTGCcccattctggaactttgagggtttatgacatagcccctctagtaatttagTAAGATCTCTATGGGTTTGACAGTCTTTGTTTGCTTTTGACCAGGTTATGGGGTGTAAAATGAGCAGATGAGATGGGCCATTGCTTTCTGAATTTTCTGTCAATAAAGATACATTGAGCTTGTGGTAGATGA

Function

GO:

id name namespace
GO:0005497 androgen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895329 lncRNA upstream 15387 25620077 ~ 25620295 (+) True G786133
TU895298 lncRNA upstream 58383 25574195 ~ 25577299 (+) True G786109
TU895280 lncRNA upstream 87906 25547172 ~ 25547776 (+) True LOC118966182
TU895276 lncRNA upstream 92030 25537524 ~ 25543652 (+) True G786089
TU895249 lncRNA upstream 149037 25486412 ~ 25486645 (+) True G786068
TU895330 lncRNA downstream 744 25641812 ~ 25642049 (+) True G786134
TU895153 lncRNA downstream 19613 25660681 ~ 25662373 (+) True LOC110531830
TU895362 lncRNA downstream 103232 25744300 ~ 25744526 (+) True G786166
TU895138 lncRNA downstream 118406 25759474 ~ 25762167 (+) True G785958
TU895367 lncRNA downstream 123200 25764268 ~ 25764485 (+) True G786171
XM_036987688.1 mRNA upstream 6114 25603761 ~ 25629568 (+) False zbtb4
XM_036987694.1 mRNA upstream 6114 25603761 ~ 25629568 (+) False zbtb4
XM_036987687.1 mRNA upstream 6114 25607605 ~ 25629568 (+) False zbtb4
XM_036987691.1 mRNA upstream 6114 25607605 ~ 25629568 (+) False zbtb4
XM_036987685.1 mRNA upstream 6114 25607862 ~ 25629568 (+) False zbtb4
XM_021615273.2 mRNA downstream 12195 25653263 ~ 25662149 (+) False LOC110531830
XM_021615274.2 mRNA downstream 12237 25653305 ~ 25659084 (+) False LOC110531830
XM_021615277.2 mRNA downstream 23410 25664478 ~ 25678818 (+) False LOC110531832
XM_021615279.2 mRNA downstream 23709 25664777 ~ 25669455 (+) False LOC110531832
XM_021615276.2 mRNA downstream 23722 25664790 ~ 25678818 (+) False LOC110531832
TU895278 other upstream 88715 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 103405 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 683586 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1052805 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1548356 24082256 ~ 24087326 (+) True hacd4
TU895142 other downstream 71929 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 317016 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 772044 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1738264 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1844726 27485794 ~ 27487523 (+) True taf6l

Expression Profile