RNA id: XM_021615273.2


Basic Information

Item Value
RNA id XM_021615273.2
length 3631
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110531830
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25653263 ~ 25662373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGTGCACCTGTAACaatgatgctgtttaatcagcttcttgttgtgccacacttgtcaggggggtggattatcttggcaaaaggcAATTATCTTGCTCactaaacagggatgtaaacacatgtgtgcaacattttagagaaataagccttTTGTGCATATGTAATATTTCTAGGATattgtatttcagctcatgaaaccaacactttacatgttgcgtttatattgttgTGTACAAAACACTAAGAACACCTTTGTAGTATTGAGTTGTCCCTCAATGAGGGACTTTTATTTTTAAAAACGAACAGCAAATTCccctattgtggctagcttcacataggtgCTAGCTAGCACTATCACCTTCAAACTACTTAGCACGTTCACATACTTGCCATTGTATAAAGAAAGAGACAACCATGGCGAATTGTGACTATTTACAAACTCAGCTAACCTCTGTTTTGAACTCGCTTGTTAAAATTGCGGTCGTGGAACTACTGCGAATTGTGGAGGATAGCGCCGTTGAACTTCGTCTGGAGGTGTCCAAGAGTAAATTTGAGAACGAAGCACTGAAAATTGAGAACGAGTCTAACAAAAACAAGTTGCAGAGTTTGGAAGCAGAACTGTGGACAGCGGGAAATCGACCATGTTCCATGTGTTATCGTTGTGTTGGAACTCCAGCTCGCGGTAAAGGTGGATGCGTCAGCCCCAAAATAGATGGAGATGCTGCTGGTCCTCCTAATTCTTCAGAGGAGGACAATGCATCATCATGGTTGCAACAATCTGCTCATACCATGGACGAGACTACAGCAGCCATGGAGAGGGATGGGATTCAAATCGTTGTCATTAAGAACGAAGCGGGGCATGAAGGCACACACAGGAAGAAGGACCCACAGGCTGGAATTTCAACAGAAGGTGAGCAGCCGTGTCCCAAAGTGGACATGGTGTATGGCAAGGAGTGGAGCCAAAGCCTGTGGCGAGACAGAGATGCTGTCAAGGAGGACTCTGCAGGACCATCGGTGACCCATCGACAGGTCAAGACTGTTTCGGCTCAGAAAAGGCGGAGTGTTTGTGTAAAGAAGTCCGTCATAGAAGATGAACCTGCTGACTCATCAAATGCTGGTACCCAGCACCAGAACACCACTGAATCCTGTGATGTGGAGAAAAGTTGTGCATTTGGAAGTTTTGAACCAGAAAGTTGTTTGAACTTTGAAGAAAACCACTTCTTGACTTCACCAGTCAACATCATGGTCCCAAAATGTGTGAAGCTACCAGGTGCAGCAGCTGTCATGGACACCCAATTAGACAAGTCCATGGACTTTGACAACATGAACAACTCCggaagaaagaagagagggagaaaaaatgGCCCCTGTAAAGGCAATGTAAATTACTGTTTTGTATGTGGGGAGCCCCAATCGAAGATCTCCCGCCACTTGAAACAGCACGAGAAGGAAAATGCTGAAATTGCTTATGTCTTAAGTCTTGACATAGCTTCAAGACAGAGGAAAGTGTTGCTGGAGAAACTGAGGAACAAGGGAAATTTCCAACACAACACTAACGTCGTAAATAAGGGATCCGGGTGTCTCAAAGTAAAAAGGAAACCCAAACCGAATAGTGGCGCGAAGAGATTTGAACCTTGTCTTTACTGTAAAGGTATGTTCATTTGGCAAGATGTGCGGAGGCACATGGGAAGATGCCCTTGTAGACCTGAGGGGGGAGATAAAAACCAAGAGCATCATTTTGGCAAGAAGCAGTACTTACAGAGCTGCTACACTGGACGAGTGAGCAGCATGTTTAATAAAATTGATGTGCAGCTCACACCTGGGGGGGGGGATTAACTAGCACTTGTATTTTTGCCTCGCCACACTGTCTTTGCCCTCGTTTGGGTGCTAGCAAGCATGCTAGGCATCAACAGCCAATCCATTAGGGTCTAGAAGCTATAGTGAGATTAAATTGGTGCTgcgtaatcaatcaatcaaatgtatttattaagcccTTTTTATACATCAGCaggtgtcacaaagtgctatacagaagcCCTACCCAAAACCCCagatagcaagcaatgcagaagcacggtggctaggaaaaactccctagaaaggcaggaacctaggaaaaaaccaggctctgaggggtggccagtcccctTTTGTCTGTGCCGGGTGGCGAttattaaggccagattgttctccaaaatgttcaaacgttcatagatgacccgcagggtcagataataatgacagtggttgtagagggtgcaacaggtcagtgtaTTAAGAGTAAATGTCACGACTTTTCATAGCTGGGCATTCAGAGGTCGAAATAgaaggtgcggtagagagagggagagttgaaaacaggaggtctgggacaaggtagcaaatccgttgaacaggtcagggtttcaaccaccaacttaccatcctgagacaaggtcgagtatagcccacaaagatctccaccgcCCGAGGAGACGACAAACctgacaggaagatcacgtcagtgactcaacccacctAGGGACGGCAGGGAAGAGCACTaaaaagccagtgactcagcccccgtaatagggtcagaggcagagaaccTAATGGAGAGGGGAACGGGACGAGacgagtcttcaataaagacaaaGGTGGAGACCGGGTCTGCGTCTCTCACGTGGATaggtagaccattccataaaaatgtatctcaataggagaaagccctgcctccagctgtttgcttagaaattataaGGACAAtaaggcctgcgtcttgtgaccgtagcatttgtaggtatgtacggcaggaccaaaccttgaaatcagccttcAAATACTCAGGCTAAGAGCTTTTGCATTAAGTTAATCTTTCTCAAATTAAGGTCCCGCTCTTTTCACGCAAACATTGCCCAACGCTCCCTGCCCAATTTCACTTATCTTCCACCCAAAATGAATGGCTTTCCGTAGTTTAATCGTCCACATCGTCTTTAGTTAAAAAAGTACCGTGAGAGCGTTTGATAAAGTGGCTCAAGCGTTCTCCAGGATACATTCTGTAGCAGCTAAATGTCTACAATGACGGTCTACTTTCGTTACACCAACGCTACGCCCCCAGTATAGCAGCTCTGTTAGGGGCTAAACTCATAAACCAGGTTGGAACCATAATGTGTAATACTCTATAAATTATCCCAATAGTGTTCAGAGTGGACTGTCagattttgttgttttgttcttttAAAGAATTTCCCGATCTAGCCTCGGTTTAAATTCTCCTCCTCTCGACAGAATGAGATTTGGGTTTCGGAggcgtgctttggtgtgtttgtttgtgtgtgttttgggaaGCGTTTGTACTTCCACCCTGCCAAAACATTAGTCACTCACCTTTCTAGATAACGTGAAACCGTGTTACCAGGTGTTGCCTTGAAGTAGATAGCAAGCTTTCCAACTTCTTTcgccaattagcttcagccggCAGGTGTGTGACCGTGGCAGTTGGTTTGAATTTATTTGGTTAGCCTACCTGTGAGGCTAGCAGGAGTTAAAGTTCCTAGTCACTGCTGGTTTGGAGATGACATAGCCTAATACAGACAGAAGCATGTCTGTTCTACAAAATGTATTCCCAAATAAATGTATTCTCTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895330 lncRNA upstream 11214 25641812 ~ 25642049 (+) True G786134
TU895329 lncRNA upstream 32968 25620077 ~ 25620295 (+) True G786133
TU895298 lncRNA upstream 75964 25574195 ~ 25577299 (+) True G786109
TU895280 lncRNA upstream 105487 25547172 ~ 25547776 (+) True LOC118966182
TU895276 lncRNA upstream 109611 25537524 ~ 25543652 (+) True G786089
TU895362 lncRNA downstream 82151 25744300 ~ 25744526 (+) True G786166
TU895138 lncRNA downstream 97325 25759474 ~ 25762167 (+) True G785958
TU895367 lncRNA downstream 102119 25764268 ~ 25764485 (+) True G786171
TU895368 lncRNA downstream 102555 25764704 ~ 25764984 (+) True G786172
TU895370 lncRNA downstream 104494 25766643 ~ 25766843 (+) True G786174
NM_001124237.1 mRNA upstream 12195 25635682 ~ 25641068 (+) True shbg
XM_036987685.1 mRNA upstream 23695 25607862 ~ 25629568 (+) False zbtb4
XM_021615277.2 mRNA downstream 2329 25664478 ~ 25678818 (+) False LOC110531832
XM_021615279.2 mRNA downstream 2628 25664777 ~ 25669455 (+) False LOC110531832
XM_021615276.2 mRNA downstream 2641 25664790 ~ 25678818 (+) False LOC110531832
XM_021615278.2 mRNA downstream 2646 25664795 ~ 25673852 (+) True LOC110531832
XM_036987695.1 mRNA downstream 18130 25680279 ~ 25712960 (+) False LOC110531831
TU895278 other upstream 106296 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 120986 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 701167 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1070386 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1565937 24082256 ~ 24087326 (+) True hacd4
TU895142 other downstream 50848 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 295935 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 750963 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1717183 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1823645 27485794 ~ 27487523 (+) True taf6l

Expression Profile