RNA id: TU895153


Basic Information

Item Value
RNA id TU895153
length 1693
lncRNA type sense_over
GC content 0.44
exon number 1
gene id LOC110531830
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25653263 ~ 25662373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGGCGAttattaaggccagattgttctccaaaatgttcaaacgttcatagatgacccgcagggtcagataataatgacagtggttgtagagggtgcaacaggtcagtgtaTTAAGAGTAAATGTCACGACTTTTCATAGCTGGGCATTCAGAGGTCGAAATAgaaggtgcggtagagagagggagagttgaaaacaggaggtctgggacaaggtagcaaatccgttgaacaggtcagggtttcaaccaccaacttaccatcctgagacaaggtcgagtatagcccacaaagatctccaccgcCCGAGGAGACGACAAACctgacaggaagatcacgtcagtgactcaacccacctAGGGACGGCAGGGAAGAGCACTaaaaagccagtgactcagcccccgtaatagggtcagaggcagagaaccTAATGGAGAGGGGAACGGGACGAGacgagtcttcaataaagacaaaGGTGGAGACCGGGTCTGCGTCTCTCACGTGGATaggtagaccattccataaaaatgtatctcaataggagaaagccctgcctccagctgtttgcttagaaattataaGGACAAtaaggcctgcgtcttgtgaccgtagcatttgtaggtatgtacggcaggaccaaaccttgaaatcagccttcAAATACTCAGGCTAAGAGCTTTTGCATTAAGTTAATCTTTCTCAAATTAAGGTCCCGCTCTTTTCACGCAAACATTGCCCAACGCTCCCTGCCCAATTTCACTTATCTTCCACCCAAAATGAATGGCTTTCCGTAGTTTAATCGTCCACATCGTCTTTAGTTAAAAAAGTACCGTGAGAGCGTTTGATAAAGTGGCTCAAGCGTTCTCCAGGATACATTCTGTAGCAGCTAAATGTCTACAATGACGGTCTACTTTCGTTACACCAACGCTACGCCCCCAGTATAGCAGCTCTGTTAGGGGCTAAACTCATAAACCAGGTTGGAACCATAATGTGTAATACTCTATAAATTATCCCAATAGTGTTCAGAGTGGACTGTCagattttgttgttttgttcttttAAAGAATTTCCCGATCTAGCCTCGGTTTAAATTCTCCTCCTCTCGACAGAATGAGATTTGGGTTTCGGAggcgtgctttggtgtgtttgtttgtgtgtgttttgggaaGCGTTTGTACTTCCACCCTGCCAAAACATTAGTCACTCACCTTTCTAGATAACGTGAAACCGTGTTACCAGGTGTTGCCTTGAAGTAGATAGCAAGCTTTCCAACTTCTTTcgccaattagcttcagccggCAGGTGTGTGACCGTGGCAGTTGGTTTGAATTTATTTGGTTAGCCTACCTGTGAGGCTAGCAGGAGTTAAAGTTCCTAGTCACTGCTGGTTTGGAGATGACATAGCCTAATACAGACAGAAGCATGTCTGTTCTACAAAATGTATTCCCAAATAAATGTATTCTCTAATATTTTATTTTCTGTTACGCTGTGTGTACTGAACTGACATGCATGATTGTTGATGACACTGATGTTCAGATGAAGCGAATTAAATAGTCTATAATGTGCACCAAAACAGCGCTTAACTCAAACAGCGGTGTGTAGCCTACCGTAGCTGGTAATTCAAAGCTTATACTTTATCACTCAGTATGTAACTTTCCAGTGCTACTATTTTTGCTGTAATGTTATTAAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895330 lncRNA upstream 18632 25641812 ~ 25642049 (+) True G786134
TU895329 lncRNA upstream 40386 25620077 ~ 25620295 (+) True G786133
TU895298 lncRNA upstream 83382 25574195 ~ 25577299 (+) True G786109
TU895280 lncRNA upstream 112905 25547172 ~ 25547776 (+) True LOC118966182
TU895276 lncRNA upstream 117029 25537524 ~ 25543652 (+) True G786089
TU895362 lncRNA downstream 81927 25744300 ~ 25744526 (+) True G786166
TU895138 lncRNA downstream 97101 25759474 ~ 25762167 (+) True G785958
TU895367 lncRNA downstream 101895 25764268 ~ 25764485 (+) True G786171
TU895368 lncRNA downstream 102331 25764704 ~ 25764984 (+) True G786172
TU895370 lncRNA downstream 104270 25766643 ~ 25766843 (+) True G786174
XM_021615274.2 mRNA upstream 1597 25653305 ~ 25659084 (+) False LOC110531830
NM_001124237.1 mRNA upstream 19613 25635682 ~ 25641068 (+) True shbg
XM_036987690.1 mRNA upstream 31113 25607862 ~ 25629568 (+) False zbtb4
XM_021615277.2 mRNA downstream 2105 25664478 ~ 25678818 (+) False LOC110531832
XM_021615279.2 mRNA downstream 2404 25664777 ~ 25669455 (+) False LOC110531832
XM_021615276.2 mRNA downstream 2417 25664790 ~ 25678818 (+) False LOC110531832
XM_021615278.2 mRNA downstream 2422 25664795 ~ 25673852 (+) True LOC110531832
XM_036987695.1 mRNA downstream 17906 25680279 ~ 25712960 (+) False LOC110531831
TU895278 other upstream 113714 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 128404 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 708585 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1077804 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1573355 24082256 ~ 24087326 (+) True hacd4
TU895142 other downstream 50624 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 295711 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 750739 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1716959 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1823421 27485794 ~ 27487523 (+) True taf6l

Expression Profile