RNA id: XM_021615279.2


Basic Information

Item Value
RNA id XM_021615279.2
length 1903
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110531832
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25664478 ~ 25678818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCGTGATAAATCTCGTCAATAGCTCCGCCCCAAATAGGAAGTCGTGCACAACCATTGTTCAACCATTTGTTTTGCCAGGGAAAAGGTAAACGTGGAGGATACGAGTCATTTAGATCAAGTCTAAACATTCTCGTTTTCTCAACAAAGTTAAAGATTTACTAGCAAATGACAATGGAGAATGCTGCCCACCTCCAAAGTCAGCTAACCTCTCTCATGAACGCGGTAATGAGGGCAGCGGTCGTGGAAATAGTCAGACTTGTAGAGGGCAGCGCCGTGGCCCTTCGCGACGAGTTGTCCAAGAGTAAACGGGAGAACGAAGCACTGAAAGCCGAGAACGAGTCGAATAAAAATAAGATGCAAAATTTGGAAGCAAAACTAGCTGCGGAGCAGCGTTCTCTTGGTTGTCATGTAGCCGAAGCTGGTGGCGATCAATTTGTCCAAACAAAGGAAGATGTTAAGGCTTGTGCAGAGAAGACCCGTGCAAGGCTGCAATCTTTGGAGCCAGCAGGCCAATCCCAGGCTACAGCTTTCAATAAAGGGGAAGGCCTAAAAGTTGTTGCCATGGAGAAGGATGGAATACAAGTACTCCGCATCAAGAAGGAAATAAATGAAGGCACAGAACATGACACACCATGTCCAATGACCGGTGAGCAGCCGTGTCCCAAAGTGGACATGGTGTATGGCAAGGAGTGGAGCCAAAGCCTGTGGCGAGACGGAAAAGAAATAGGAGACCGCAGCGACGGAACAGAGGAGAAAGAAACTCCAGGACCATCAATGACCCAGCATCAGAACGGAGGTCCACTTCAGTGCAGTAAGCTGAGTCCATCCACTCCTATCTTCAAAGTCTTCTGTGATCCTGAACGAGACACGTATCCCAACTAATGACTTAAGAGGGAATTTCTGAATTCTGTTCTCCTTGTCACTGACTGGTCATGACGGATAGATGACAATGTTAAAGATCCTTGTCTTTATTTACTGGTTGGCCCACGGGACCTCCTATAAAACTGTCTCAAGGGGGGTGGACAGTAGTCGCGTGCCACGTCAGGGTCAAGATCCCCAGTGCACCGCACCCCCAACAATGTCCAGGTGAACATCCCCTCCCCACCATCAACTTCCAAGGGGTCTGTGACCACATGCCGCTTCATCAATATCTTCGCGGGGCTGCCTCGGTCTATGAGCAACTTGAAGGTGCTCAGGCATAGTCCCCTGCAGAAAAGTGCCCTGTACCCTCCCCCCAGATGCTTCCTCCTGGGCAACGGCGGGTACCCCTGTCTACAGACGCCTGTGTGCCTCATCACACCATATCCAAAGTCTGATCAGAACCCAGAGCACGACCAGTTTAACCAGAACCACGCCAAGGCTCTCTTCCCCCATCGAGAGGACCTTCAACATCATGAGAAAGCACTGGCACATCTTCCTCTAGCCCCTCAAGCCCCACCCATTCTTCATCCCGAAAGTGCTTGCAATGTGCACTGTGCTGCATAACATCTGCCTCCGGTCCGGGGACGTGCTGGAGCCAGTAAAGATTGAGGACAGAAACGAGGTGACTGAGGCTTTGAAGAAGTGGCTAGTGTCGAATGAGACCAGCAGAAAGGCATTGAGGGACAGTTTGGCTTAACAGATCTCTACAATGAAATGAATGGCCTCAGTGAATGATGGGCAAGGGGCATCTGCACCGGCAAACATGATGGCAGTGCAACAATAATTGGCTTACAACATAGTGGTGATGGAAATGGATTACTTCAGGAGCCAATAAGCGGTGGTGGAACTGTCGCTGCCAACCTTTCACGTGTTTCGTGAAACAATTTAGCAAAGTCACCTCTCCTATTCTAATGCTTGTATACAgtaccatgtacagtgccttgcgaaagtattcggcccccttgaactttgcaacctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895153 lncRNA upstream 2404 25660681 ~ 25662373 (+) True LOC110531830
TU895330 lncRNA upstream 22728 25641812 ~ 25642049 (+) True G786134
TU895329 lncRNA upstream 44482 25620077 ~ 25620295 (+) True G786133
TU895298 lncRNA upstream 87478 25574195 ~ 25577299 (+) True G786109
TU895280 lncRNA upstream 117001 25547172 ~ 25547776 (+) True LOC118966182
TU895362 lncRNA downstream 74845 25744300 ~ 25744526 (+) True G786166
TU895138 lncRNA downstream 90019 25759474 ~ 25762167 (+) True G785958
TU895367 lncRNA downstream 94813 25764268 ~ 25764485 (+) True G786171
TU895368 lncRNA downstream 95249 25764704 ~ 25764984 (+) True G786172
TU895370 lncRNA downstream 97188 25766643 ~ 25766843 (+) True G786174
XM_021615273.2 mRNA upstream 2628 25653263 ~ 25662149 (+) False LOC110531830
XM_021615274.2 mRNA upstream 5693 25653305 ~ 25659084 (+) False LOC110531830
NM_001124237.1 mRNA upstream 23709 25635682 ~ 25641068 (+) True shbg
XM_036987689.1 mRNA upstream 35209 25608163 ~ 25629568 (+) False zbtb4
XM_036987695.1 mRNA downstream 10824 25680279 ~ 25712960 (+) False LOC110531831
XM_036987697.1 mRNA downstream 25761 25695216 ~ 25712960 (+) True LOC110531831
XM_021615283.2 mRNA downstream 80447 25749902 ~ 25758055 (+) False LOC110531834
XM_021615284.2 mRNA downstream 82786 25752241 ~ 25758055 (+) True LOC110531834
XM_036987699.1 mRNA downstream 116641 25786096 ~ 25791195 (+) False LOC110531838
TU895278 other upstream 117810 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 132500 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 712681 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1081900 24582387 ~ 24582877 (+) True G785138
TU893234 other upstream 1577451 24082256 ~ 24087326 (+) True hacd4
TU895142 other downstream 43542 25712997 ~ 25742909 (+) True G785962
TU895436 other downstream 288629 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 743657 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1709877 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1816339 27485794 ~ 27487523 (+) True taf6l

Expression Profile