RNA id: XM_021615285.2


Basic Information

Item Value
RNA id XM_021615285.2
length 2486
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110531838
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 25786096 ~ 25791195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGCAATGTTTCTGCTCAAGCCTCCATCTTGATTTAAATGTCGCTCGCAAAACTTTATTGAAACACCCCGTATGCAAAATAGTTTAGCTTAGCTATAGTAGCTTGGCTAACGTTATCTAGTAGGAAACGAGCAAAGTAAAAGTTGGGTGATGGGCTTTTAACTGTTTGTCACGTTGAGCCTGCAATGTTGGATTTTATCTCAACGCGACAGTACTTTGATAATGCAACaatctgtgtttgtttgttatttCTCACACGAGTGCTGTCCATTTGACCAGAGTGCAGGCTAGAAGAATCCGACGGAACGTGAGACCCTGCGGAACATCTCGAGAAGGCTACgtgctaggctagctagctagctagctacctacccaTTGGGTGCGGGTTGGAGGGACATATAATAACAAAATATCGAAGATTGTTTTAAGTTAAACAGTTCATAAAATAATGCCCAGCAAAAAGAAGAAATACAATGCGAGATTCCCCCCGGCCAGGATTAAGAAGATTATGCAGACTGATGAAGAGATAGGCAAAGTGGCTGCCGCCGTTCCTGTCATCATATCACGAGCTCTGGAGCTGTTCCTGGAGTCTCTCCTGACGAAAGCCTGTCAAGTCACCCAGTCCCGGAACGCAAAAACAATGACGACGTCACACTTTGTGTGTCTTGGTAGAAAACAGTGCATTGAGCTGGAGCAGCAGTTTGACTTCCTGAAGGACCTGGTAGCGGCAGTGCCTGACATGCAGGGCGAGGGAGAGGACAACCACGCAGAGGGAGGGGAAAAGGTTGCACGCAGAGGTCGAAAGCCGGGGTCAGGCCGCAAGAATGGAGGAGTTGGCTGCAAGGGCAAGGACAAGAAGCTATCAGGCACAGAGTCAGAGCAAGAGGATGACTCCGAGGACAGCGAGACAGACGAGGATGAGGAAGACGGGTCTCAGTCAAGCACAAACCTGCAGCCACAATCCCGATTCCACAGCCCAGACACCATGCCACCCCAGTACCTCCACATGGGCACCGCACAAGGGGGCCTGGTCATGCCCCTGGGCTCCTTTGCCCCCCACCCCTCGCTGATGGGCACCGcacccccacctcccccctccaTGCCGCACAAAGATGAAGACGATGATGATGAAGACTATGACTCTTAGCTCCCCCCCGCTCTTTTTACCTTTAATTTTCTCTTAAGTTCTTCTCTTCTGTGGCTGCATTGAGAAAGAGGTGAGTCTGGGCAGATGCTCACATGCGGCCCATTGTTAAGGAAAAGCCTCCAACAACTGGCAGTAAGGTGTGTAGACATGACAGCTGGCACCACTGAAGACGAGTAATCGGTTGTATAttgtgtttaattatttgttattttattgtggaGGGGAAAAAATGAACCAGGTTGTTTTATAAAGACAGGTGGTTGTTCTATTTGGACTAAAAATGTCAGTtgatgttctgaaaggcccccaGCTCAAGTACCGGTTTGATTAAGTCCCCCATTGTAGTTTGCACTTTGGTTATTCTCTCATCTCTGTTTTCTGCATACGTCATTGGTGTTCAACAGACATATCACTCCAGCTCCTTGTCCACTTCTTCAACGTCTGCTCTGGTTCAGTTGAGATGATCCAACTGTAATGCCTGTGCAGCCTACGTAGCCTCATAgaatactgtacacacagacaccTTCTCGAGATGAAGTCAGAGCAGTGGTCGGTTGTATTTTTGAAAGGGGTCAGCACTTTCCTATAGCAAAGGGAGATGAGATGATTGTCTGTGAGGATTCTGAATTTGGCAGAGCGGTTAGATCTTGGTCTTGCTTTCGGAGTTGGCCGTTATTGCACGTGGCTATTCCAATTGTTAGGGTGTGGGTAAGGAGATGTGTTTTACTGTAGGTTATGAATTCTTCTCAATGTGACTTGAGTTGAGGATTTTCCCCTTTTTTAATGCAACTTTTTATGACGATAATTGATCCTCCTGAAGACCTTGGCCGTTAGCTTACGTCAACCATAATCACATGTCATTATGCTAATGATTACAACTCCAATTGGTTGTTTTTGTTGATTTGAAATATGAGTGACAAGTCACTGCTTTTGAGGTAAAATATGTTGTGTTGTACCCCCTTCCCCACCCCAACTATCTCCTTCTTGAAGACAGATATTTCTGTGCTGGCTATTCTTATCTGAAATGTACTGTGATGCTCCTCCTGGACCATAACTTTGTTTTTAAAGTTGTTAAACCGCTCACCTTTTCGCCTATAATTTGTTTTCAAAAATATATCGTCCCCCCACTTGGAATAAAATTCTcctttgtattgtatttttttcttctctcttttaGATTGTTTTAATGTACACATTGAAACGCAGAGAAGGATAGGGCTCCCGTTTCAGTGTCTCTTGATATGAAATGTTTTAAGGTAGGCCGTTGAACTTGACGCTGTATGTAaaattttaacattttattttgtatGGGTGAAATAAAGTTCAGATTTCAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU895386 lncRNA upstream 2786 25782222 ~ 25783314 (+) True G786189
TU895384 lncRNA upstream 4151 25781740 ~ 25781949 (+) True G786188
TU895379 lncRNA upstream 10882 25774811 ~ 25775218 (+) True G786183
TU895370 lncRNA upstream 19257 25766643 ~ 25766843 (+) True G786174
TU895368 lncRNA upstream 21116 25764704 ~ 25764984 (+) True G786172
TU895162 lncRNA downstream 33056 25824251 ~ 25826461 (+) False LOC110531839
TU895143 lncRNA downstream 37498 25828693 ~ 25832280 (+) True LOC110531839
TU895402 lncRNA downstream 45968 25837163 ~ 25837537 (+) True G786205
TU895420 lncRNA downstream 83332 25874527 ~ 25885097 (+) False G786218
TU895431 lncRNA downstream 83332 25874527 ~ 25944044 (+) False G786218
XM_021615283.2 mRNA upstream 28045 25749902 ~ 25758055 (+) False LOC110531834
XM_021615284.2 mRNA upstream 28045 25752241 ~ 25758055 (+) True LOC110531834
XM_036987695.1 mRNA upstream 73140 25680279 ~ 25712960 (+) False LOC110531831
XM_036987697.1 mRNA upstream 73140 25695216 ~ 25712960 (+) True LOC110531831
XM_021615278.2 mRNA upstream 112248 25664795 ~ 25673852 (+) True LOC110531832
XM_021615288.2 mRNA downstream 1571 25792766 ~ 25832287 (+) False LOC110531839
XM_036987701.1 mRNA downstream 1577 25792772 ~ 25832287 (+) False LOC110531839
XM_036987710.1 mRNA downstream 1405326 27196521 ~ 27213187 (+) True alpk1
XM_021615294.2 mRNA downstream 1422924 27214119 ~ 27220387 (+) True epdl1
XR_002474765.2 mRNA downstream 1465408 27256603 ~ 27267492 (+) True LOC110531847
TU895142 other upstream 43191 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 239133 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 253823 25527673 ~ 25532277 (+) True LOC110531825
TU894522 other upstream 834004 24930351 ~ 24952096 (+) True LOC110531788
TU894183 other upstream 1203223 24582387 ~ 24582877 (+) True G785138
TU895436 other downstream 166889 25958084 ~ 25958867 (+) True G786218
TU895770 other downstream 621917 26413112 ~ 26413532 (+) True G786496
TU896328 other downstream 1588137 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 1694599 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 3548786 29339981 ~ 29342203 (+) False rbpjb

Expression Profile