RNA id: XM_036987710.1


Basic Information

Item Value
RNA id XM_036987710.1
length 4019
RNA type mRNA
GC content 0.50
exon number 14
gene id alpk1
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27196521 ~ 27213187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agactcgcaATGCCCGTGTGTTTTTAAACTAGAGATGCCCACGTGATGTCAATCAATCTTAAATTCAGAATTTAAACCAATGAAATTGCAGTACTCACAAATGCCCATCCTCCAAAGTTCTGCCCAACCAGGAAGTTATAAGCCGACGGTGTCAGAGAGGACTGACGAGAGGTTACTAAAAGGCACCATGGACAGCAAGGAGGTGGGAGCCATGCTAGAGGAGTGTCACAGGGCTGCGTCTGCAGCAGGTCTGGTGGTTGTGGAGCCCACAGAGGAAGTCAAGCTCAACTTCCAAAGATACAGAGAGTCCCTGCCAGTTGAACTGAGCATGCTACTGCAGGAGGCAGTGGCAATGAGGTGGCCATTTGTACCAGAGAAGTGGCAGTACACGCAGTCCGTGACTTCCCAGGACAAAGTCAACTTGAAGGACGTCATTAGTCTGCATCTACCACAGCTACTGGCTCTGCTGAAGGCGTCCATCTTGGCCAGGGAACCCCAGTGGGCGGCAAGTGTGGTCTTCCTGATGGATCGGTTCCTGTATTGGACAGATGAGTCCAGCCGGCTGCTGAAGATCACCAAGCTCCTCCACAGACACTACCCAGGAACCCCCATCGCCCCCCAGCTGGTCATACGACAGGCCAGGGTCTATCTCAATGACGGTAAACTCCAGAAGGCAGAGTACATACTGAGCAGTCTCATCAACACTAGTGGAGCAACAGGTTGCTggatatatcagtctgacagcgATAGGACTCTTATCCAGGCGGTCAGTGTGCAAGTGCGTGGACAGGTTCTGCAGAAACTGGGACTGTGGCTGGAGGCTGCTGAGCTGATCTGGACCTCCCTGGTCGGCTATTACGCTCTTCCTCAACCTGATAAAAAGGGCATTGGAACGTCCCTTGGGATTCTGGCCAACATATTGGTGTCTATGAATGATGGCGACTTCCATGCATTTAAGACCAATCCGGGCATTGACTTGTGTTTCCTTGAGAACGATGGCCACCGTCTCCTCTCAGCAGCTGAGGCAGCTAAAATGGCGGTGGTGTACAGCCAGTATGCCTCACTGTACGTGTTAACCAATGTGgTCACCCAAGGCACCTGTCTGTTGTCCTACAGTTTCTCAGTAGAATGCCCCCCCTCGGACAAACACTCCTTCCTCCTCCAGGCCAAGGAAGCCTTTGAGATCGGCCTACTTACCAAAACAGGGGGGGACATGGTCACCAGCAAACAGGAGCTCCACACATTCCTCAAGGCAGCCTACTCTCTGACTGTCAGTCACAAGTGGCTGGGCACCCCTCAGAAGACAGTGGACCAGGCCAGATTGGTATGCCGGGAGGCTTTGGAGAAGTTCTATGCCTACTGCCATGCAGACAGCCAACAGAGAGATGCTCTTTGCACTGGAGTTATGAGTCTGATAACCCAAGTGAAGATTCTATTGCGGGTCAATCCATTCTTGAACTCAGACAAGGGGTCGTTTATCCCAGATAGCTATAGAGACGTGGTGGAAGAGCGAGCAGTGCGGTTCACTCTGGATGGTTTCTCCCAGGTGATGGGGAGGTTCAGGCAGTACCACACCTCAGTGTGTGAGGCCTCTGAGGCAAGCTGTAGGAGGAAACATGAAGGCCACCAGGCTGGACTCTGTATAACAGCACTGGGGACCACGGCAACGGCCCCTAACACAGAGTGTGCCACTGAGAACCACAAGCCCCAAAAAGCCACACATAAAGAAGAGTTACACAGAGACAAAGCACCTTTTTGTTTAGCTCCAAGGTTACCTCAGGAACAGGAGCTCTGTACAACTCTGGGTAGCACTGAAGAGCTACCAAGCAATAGCTATAATAAAATGTCCCTCAAATCACTCAGTAGCAGCTTTGGGTCCTCATTTGAAAAAGTATCTTTGAACAGCACTGGTTCTCCCCTCAGCTGTAGTGGCAACAAAGATGGCAGTGTTCCGGATAAGGTAAACATGGAGTATCTGTGCGATCCAAACTGTCTCACCGAGGTTAGTGAAGATGGGTTGGAAAATGGGTCCGAATCTAAAAGCAAGACCAGGAAAAGAGATATCAGAGCAAGTCTCAGTGCTCAGGCAGGATCCAACTCTTCCACCCGGGTCACTTCCTCATCATCCACCCACACCGGAAGTGATGTTGAGCAGTTTGAAATGATCGACGAACAGAGTCTAATCGAGACTGTGGAGACCGAGGAGGAGTGTCGCAGGTGTGGTGCGTCAGTGTCGGTGAGACCTACAGGAGACGGAGTAGTGACTCATCCAGAGTACCAAGACAAGTCGAGGACTTCCTCTTTTAGCTCCATTGGCGACAGCCTCGGCTCCCAGTCATCATGGCAGAAACTATCCCTATCTGACACATCCCGGGAGGCAGCTGCAGTACCACAAATAGGTTCTGCAGCCCCAGCAGCTGTAAATGAACACCGAGGTCCCGCCTCCTCGCAGATAGTTCCGAACTTCACTGTGGATCAAGAAGCAGAAACGGAGGAAGACACTGGATCCCCTCACCCCTTTGGGCCTAACAGTGCTGCAGCGTATCACAGAAGACCTCCACAACTAGGATCTGAGGGCCTCATCCCAGAGCAGTGTCTCTCTACAGAGATAGACAGCTCCTATGAGATGGTGGAGAAAGAGATAGGACACATAGTCCACAACACTGAACCCTGTGCTGGAGAGAAGCAGATTCCCTCTCACCCAAACCACTCATGCTATACCTGTCTAAAGCACGGCATCATGGGTGGTCTAGTGCCTGAGAACCAGTACGTTTTGACAGAGGAGGACTACATCGCCCTCCTGGCTGGGATGTGTCATGGCTGTATGTTAAAGAGACTGCAGAGTGACATGAAATTCAAGCTTGGGAAACAGAAAAGCGCCTACAGTGCTCTCCTTCTGAAGTACTCCAGGGCCTCTGGATTGTGGACGTCCAGAGAGACCTATGTGTACATCGGAGAGCCAATAGGGAAGCAAGGCCAGCAGAGAATAGCATTATGGGTGCAGTTTCTACACCAAGAGGAAAGGCTGAGTAGCTATGTGGGGAAGGAGTACCTAGAACCTAAGGGCATTCAGTTCCACCTGAGTGACGTGGAGAGGCAGATGACGGCCCAGTACTACGTGACAGAGTTTAACAAGAGACTCTACAAGGAGAAAGTGACCGCTCAGATCTTCTTCATCCCTTCAGAAGTGCTACTGATCTTGGAGGGGGATGAGGTGGTGGACTGTGTGACAGTGGAGCCCTACATGCTGGGGGACTTTGTGAAGCTCACCAACAACACTACTAAAGTGGACAAGCGGTTCAAGGCGTCAGAATATGGAATCGCTTTCGGACATTTCACCTACCAGTTCTCTGGATGCCAAGAGGTTGTTGTCGACCTACAAGgGTGGGTGACCGCCAATGGGAAGGGGCTGACGTACCTCACAGACCCTCAGATCCACTCTCTCAGGACCCCTAAAGGTGCCACCAACTTCGCTGAGAGGGGGGTCAGTTATTTCCTAAAGGACCAGCATGGACCAGAATGCAACAGTATCTGTGACCTACTGTCACTGGGCAAACTGCAGTAACATACGTCTTGAAAACAGTGACGTCTACTCCAGATAGAGATGTGTGTTTGCTTGGGGCTCCTTGACAACTCTCGAACAACATAATGTTTTGGCCTAAAATATGTGCATTGCGATCCCCTACTACAATGCACAATGCACATTCTGACCTATTAGACATGGGCTGATCCTGTGGTGAAAACAGCAGTGTAGTGAAGCACATTCGGTAGCATGTGATTTAATTTCTAGAAGTGAGAATTGCCTGCCCCGTTTACCAACCACAACCAGTTCTGTTAAAATCAGGCCGTACTGTATTTTCAATGTACTGTAAATGTTTTTGTGACCCTTGATACCACTCTGGTTTATGTATTTATTACCTAAGGCCTGCGCTCTGTTGTAGCCCACAAAGTTTTATTAAATTGACATTGATCTGTTTTAATTGCTTTTGAATTGATTAAATCGGATCACAGAAATGAGA

Function

GO: NA

KEGG:

id description
K08868 ALPK; alpha-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896170 lncRNA upstream 125577 27070729 ~ 27070944 (+) True G786877
TU896092 lncRNA upstream 245531 26950789 ~ 26950990 (+) True G786799
TU896091 lncRNA upstream 246043 26950265 ~ 26950478 (+) True G786798
TU896090 lncRNA upstream 262312 26933967 ~ 26934209 (+) True G786797
TU896076 lncRNA upstream 289880 26906228 ~ 26906641 (+) True G786783
TU896250 lncRNA downstream 32383 27245570 ~ 27245845 (+) True G786952
TU896263 lncRNA downstream 64591 27277778 ~ 27277986 (+) True G786965
TU896264 lncRNA downstream 65500 27278687 ~ 27280021 (+) False G786966
TU896265 lncRNA downstream 65500 27278687 ~ 27283799 (+) True G786966
TU896267 lncRNA downstream 78703 27291890 ~ 27292246 (+) True G786968
XM_021615288.2 mRNA upstream 1364234 25792766 ~ 25832287 (+) False LOC110531839
XM_036987701.1 mRNA upstream 1364234 25792772 ~ 25832287 (+) False LOC110531839
XM_036987699.1 mRNA upstream 1405326 25786096 ~ 25791195 (+) False LOC110531838
XM_021615285.2 mRNA upstream 1405326 25786100 ~ 25791195 (+) False LOC110531838
XM_021615286.2 mRNA upstream 1405326 25786106 ~ 25791195 (+) False LOC110531838
XM_021615294.2 mRNA downstream 932 27214119 ~ 27220387 (+) True epdl1
XR_002474765.2 mRNA downstream 43416 27256603 ~ 27267492 (+) True LOC110531847
XM_021615311.2 mRNA downstream 127511 27340698 ~ 27375922 (+) False LOC110531852
XM_021615314.2 mRNA downstream 127530 27340717 ~ 27374100 (+) False LOC110531852
XM_021615313.2 mRNA downstream 127539 27340726 ~ 27374100 (+) False LOC110531852
TU895770 other upstream 782989 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1237654 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1453612 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 1649554 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 1664244 25527673 ~ 25532277 (+) True LOC110531825
TU896328 other downstream 166145 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 272607 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 2126794 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 2127260 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 3069488 30282675 ~ 30288163 (+) False LOC110531891

Expression Profile