RNA id: XM_021615314.2


Basic Information

Item Value
RNA id XM_021615314.2
length 1686
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110531852
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27340698 ~ 27375922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCAGTCCTCAACCATACAGTGCCCTCCATCCACACAGTGCTTGGTACATGCGCGTGAAGGTGCACAGGCTCAGTGACACTGCGTCCAGGTCTTGGGGAATACGAGGCAAGTTGGAAGAAGACATTTTAAGGACAGCAATAATACACAACAAATTCTCGCCGCCACCGTGCAGAATTTTTTGAAATTATAGTAAAATGGCAGATCCAATGACCCAGTCCGCCCAGATATCATCGTCGCAGGGGCTGGCCGATGGACAAAACTCTGTTGCGGCCAAAGACTCAAAAATGTCCGTCAAGGACTTGGTGCACTGGCGAGACCCCAAGAAGTCTGGCGTGGTGTTCGGCCTGTCCCTGCTGACGCTCCTGTCCCTGGCGGCGTTCAGCGTCATCAGCGTGATCTCCTACCTGCTCCTCGCCCTGCTCTGTGTCACCATCTCCTTCCGCATCTACAAGTCCGTCGTCCAGGCCGTGCAGAAGTCCAACGACGGACACCCCTTCAAGGCTCTGATGGAGAAGGATGTCAGCATTCCCCCCGAGACCTTCCACAAGCACGTGGACGTCAGTTTGACCTACATTAACCGATTCCTCAAACAGATGAGCAAACTCTTCCTGGTCGAGGACCTCATCGACTCCCTGAAGCTGGCTGTAGTGATGTGGCTGCTGACCTACGTAGGAGCCGTCTTCAACGGCATCACCATCCTCATCCTGGctGACATCCTCCTATTTGCCGTGCCCCCGTTCTATGAGAAGAACAAGACCCAGATTGATCGCTACATGGAGATTGCACGCACTCAAGTCAACACCACAATGGCTAAGTTGCAAGAGAAACTCCCTGGAGCCGTCAAGCGTACGAAAGCTGAATGAGCGGCCCGCAGACATCTTCATCACCATCCTCCTCACATGTATCCCATCTTAaatcccctcctccctgccctcCCCTCCTTCTCAGTCCTCCTCCCCCTATCCACCATCTAACATCCACTCCCTCCCTTCCACCAACCATCATACCATCTGCACTGAACCAGCTAGGTAGAAGAGAACAAAGTAATGCTACTCAATGTGAACCGCGCAGCTTAACTAAGAGCATTTAGAAAAAGAACTGCGCCTACTGTGTCGACAGGAAACGCGTCTAGCAGGAGGAAGTGATGTAATGCCGTGGCAGGACGCCTGTCTTTGGGCGCactaaaaatcaaaataaatgatgCAGGGGTCAAGTGAACTAGACGGAATCTATGACCTGGTTTTGTAGTGTACAGTTGGAGTGTGTAGGGTTTATCATTGACGAGTAAGTATGAGTGTTAGTCTCGCAAAAAAAGCTAATGTCTGTACTTTTAACTAATATATATTTAGCTGAAAGTAAACCGAACAAGTAGAAGAGTAAAACGCAtaaaaagagcaaaatgattttAGAAAAACGTACCCTTTGGGTGTCAATTGTGGCTTGTCTTTTtcctgctctctcgctctgtggcAGTTTGTATggataaacaaaaaaaaatatataaagtttGTGTTTGGAACGTGGTACTGGGATTTCACTGTTACGGTTTTGGTGTCAATTGTGTTTTGCTCACCTTAAAGGCACTTATGTATGTATAACGTTTCTGCAATGTACCGAACATTTcctagatttttttattttaatcccaCGAGCAGGTTGAAATAAAATGATTTGGAACACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896303 lncRNA upstream 4193 27336264 ~ 27336524 (+) True G786999
TU896282 lncRNA upstream 33780 27305897 ~ 27306937 (+) True G786980
TU896267 lncRNA upstream 48471 27291890 ~ 27292246 (+) True G786968
TU896265 lncRNA upstream 56918 27278687 ~ 27283799 (+) True G786966
TU896264 lncRNA upstream 60696 27278687 ~ 27280021 (+) False G786966
TU896308 lncRNA downstream 2052 27376152 ~ 27377469 (+) True G787002
TU896333 lncRNA downstream 10616 27384716 ~ 27384982 (+) True G787027
TU896321 lncRNA downstream 22024 27396124 ~ 27397631 (+) True LOC110531855
TU896322 lncRNA downstream 25683 27399783 ~ 27400279 (+) True G787016
TU896319 lncRNA downstream 26267 27400367 ~ 27401709 (+) True G787013
XR_002474765.2 mRNA upstream 73225 27256603 ~ 27267492 (+) True LOC110531847
XM_021615294.2 mRNA upstream 120330 27214119 ~ 27220387 (+) True epdl1
XM_036987710.1 mRNA upstream 127530 27196521 ~ 27213187 (+) True alpk1
XM_021615288.2 mRNA upstream 1508430 25792766 ~ 25832287 (+) False LOC110531839
XM_036987727.1 mRNA downstream 14791 27388891 ~ 27399023 (+) False LOC110531855
XM_021615320.2 mRNA downstream 14792 27388892 ~ 27399023 (+) False LOC110531855
XM_021615319.2 mRNA downstream 14797 27388897 ~ 27399023 (+) False LOC110531855
XM_021615318.2 mRNA downstream 14798 27388898 ~ 27399023 (+) False LOC110531855
XM_036987725.1 mRNA downstream 15040 27389140 ~ 27399023 (+) False LOC110531855
TU895770 other upstream 927185 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1381850 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1597808 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 1793750 25545231 ~ 25546967 (+) True G786091
TU895266 other upstream 1808440 25527673 ~ 25532277 (+) True LOC110531825
TU896328 other downstream 5232 27379332 ~ 27379664 (+) True G787022
TU896363 other downstream 111694 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 1965881 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1966347 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2908575 30282675 ~ 30288163 (+) False LOC110531891

Expression Profile