RNA id: TU896321


Basic Information

Item Value
RNA id TU896321
length 205
lncRNA type sense_over
GC content 0.52
exon number 2
gene id LOC110531855
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27388891 ~ 27399023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCTCACCCATCGCTACTCTCACACCTCCGCCCAACCCTCTGACTAGCATCAAGCTCTTACCAATTCATCCTCCCAGTCAAACGTCCACATTCACACCAACACAGACTCCTTTTCCCAGACGGTGATCATAACGACAACTACAACGGCCCTATCTCAGATGCTGTATGGAGGAACTGCTACCTCATGGACTACGACCCCCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896333 lncRNA upstream 11142 27384716 ~ 27384982 (+) True G787027
TU896308 lncRNA upstream 18655 27376152 ~ 27377469 (+) True G787002
TU896303 lncRNA upstream 59600 27336264 ~ 27336524 (+) True G786999
TU896282 lncRNA upstream 89187 27305897 ~ 27306937 (+) True G786980
TU896267 lncRNA upstream 103878 27291890 ~ 27292246 (+) True G786968
TU896322 lncRNA downstream 2152 27399783 ~ 27400279 (+) True G787016
TU896319 lncRNA downstream 2736 27400367 ~ 27401709 (+) True G787013
TU896413 lncRNA downstream 103748 27501379 ~ 27506375 (+) True G787069
TU896452 lncRNA downstream 180192 27577823 ~ 27578280 (+) True LOC110533009
TU896453 lncRNA downstream 186832 27584463 ~ 27584768 (+) True G787107
XM_021615311.2 mRNA upstream 20202 27340698 ~ 27375922 (+) False LOC110531852
XM_021615314.2 mRNA upstream 22024 27340717 ~ 27374100 (+) False LOC110531852
XM_021615313.2 mRNA upstream 22024 27340726 ~ 27374100 (+) False LOC110531852
XM_036987724.1 mRNA upstream 22024 27341688 ~ 27374100 (+) True LOC110531852
XR_002474765.2 mRNA upstream 128632 27256603 ~ 27267492 (+) True LOC110531847
XM_036987730.1 mRNA downstream 9670 27407301 ~ 27438764 (+) False LOC110531857
XM_036987731.1 mRNA downstream 9671 27407302 ~ 27438764 (+) False LOC110531857
XM_036987729.1 mRNA downstream 10010 27407641 ~ 27438764 (+) False LOC110531857
XM_036987732.1 mRNA downstream 10010 27407641 ~ 27438764 (+) False LOC110531857
XM_036987735.1 mRNA downstream 10010 27407641 ~ 27438764 (+) False LOC110531857
TU896328 other upstream 16460 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 982592 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1437257 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1653215 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 1849157 25545231 ~ 25546967 (+) True G786091
TU896363 other downstream 88163 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 1942350 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1942816 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2885044 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 2885044 30282675 ~ 30288163 (+) True LOC110531891