RNA id: XM_036987730.1


Basic Information

Item Value
RNA id XM_036987730.1
length 4186
RNA type mRNA
GC content 0.51
exon number 25
gene id LOC110531857
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27407301 ~ 27438764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatatggccgaccagtTTCTTCAGAGCCTTTCAATGACCAATACATAGCGTTAGCAATCCGGTGTTTATATACATCATGATGTGTATGTAACCCAAAAAGTTGTGTTACAAGTTTCAGTAAGGAGCATATTATTGCATGCACGTGTAGTCATATAAAAACGAGGCGATAGTTAACCTATCATTGTCTCCAGGAGAATATTTTTGGCAATTCTAGTGCGGTGTGCATGTGAATCTATTGGGCGATTGTGCATTTGCCCACCAGATGCTCAGCTCATTTCCTGGATTTATGTACAATGATGTGTCGGCAGGCAGCAGCGCTGAGTACCCAGACCGGGTGTCCGTGATGGAAGGGCGCCTTCAGTTGCAGGAGAACGAGATCACTCTGCTCAAGTCGTCACTGGCCGACGCGCTGCGCAGGCTCCGCCTCCACGACCAGCTGATCCCCCTGCTCAAACAGCAGCTCATCGCAGTGAACCCTGCAGCGGCCCGTGTCCTGAACCAAGTCTTCTGCTCTGATGGTTTCTCCAGCTCTCGTAAACTGTCGTCCAGCTCGGCCCTTGATGGCACCCACCACCCTGCCACCAGCCAAGTGGGAAACAACATTGAAGGTGAGAATGGTCACTATGGGGACAATGGATCCCTAGCCCCTATGTGTAAGGCCCCTACATATGATCGGGCTACCCAAACAGAGCTCACCCCGCTGGGGCAGGACCAGGGGCTAGACGGGGTCCCCCTGGCTCTCACCAGTGACATCCAGAGCCTCTCCCTGGAAGATGCCCTCCCCAAGGGTATCTCTCTGACTGAGGGGTCCCAGGCCAAGCTCCACCGCATCCAGGGGCTTGAAGAGGATGATGAGGAAGTGGAGAAGGAAAAGGACCTGAGCAGGACGTCTTCTGTAGAGGAGCCCATCCACCCCACCACCATCAGGAGCCTCCAGAGAGAGGACCTCCAGGACCCCAATGGCTCCACGGAGAGCCTGAGTTCAGCCCGCCAGACCCCAATCTCGGGGTCCCCAGTCCCCCCTAAGGACCTGCCCCCCAGCCCCCGGAGCGGACCTCTCTCCACTATCCTGGAGGGCCAGAATAAACCCTTAGTTCGCAGGAACAGTGAGAAACTGGCAAAGGACCCCCAGGAGAAGACCAAGAAGCGGTTGGACAAAAAGGCAGCTTCTTCGGCCAACCTCCTCACCCGATCCCCCAGTctggagagCCGGACCAAAGATCTCATCGCCAGTGCAGGTTCTCCCGGATCGAGACGAGGAACCCAAGGTCAATCAATCAAGATGTTCATCCGTGGCCGACCAATCACCATGTACGTCCCCTCCAACATCCAGAACTACGATGACCTGAGGATGGAGCCACCTGTAGAGAAACTGGAACTCGATTGGGTTTACGGTTACCGGGGGCGCGACTGCCGAGCCAACCTGTACCTGCTGGCGTCGGGGGAGGCAGTATACTTCATCGCGTGTGTGGTGGTGCTGTACCACATCAACAACCGCACTCAACGCCACTACAGCAAACACACAGACTGTGTCCGCTGTCTAACCATCCATCCAGACAAGGTGCGGGTGGCGTCGGGACAGACGGCTGGGGTGGATAAGGATGGCAAGCCCCTGCAGCCTTATGTCCACATATGGGATTCCTCCACACTGATCACCCTACAACAGATAGGACTTGGCACGTTTGAGCGAGGTGTAGGATCTGTGGCCTTCTCCTTTGCAGACTCTGGAGCCTTCCTCTGTGTGATTGATGACTCCAATGAAcacatgctgtctgtgtgggactGCGCCAAAGGAACCAAGCACGCAGAGGTTAAGAGCACCAACGAGGCAGTGTTTACAGTAGAGTTCAACCCCAACGACAGCACCAACATCATCACCTGTGGGAAGTCTCACGTCTACTTCTGGACGCTAAGTGCTGGCTCTCTCACCAAGAAACAGGGCATCTTTGGGAAATACAAGAAGCCCAAGTTCATCCAGTGCTTTGTGTTCAGCCTGACGGGAGACGTGCTGACTGGGGACTCAGAGGGGAACATCCTGACATGGGGCAAATCACCCGGCGACGTCAAGACACTGGGGAAAGGGGCCAAAGTACCTCCTCAACCAACTATGCTACCAGACTCCATAGCTGTGACACTTTTTTTTCCCCTTGCTCTCCAAATGTGTGAGACCTGTGACAATAAGACATTCCAGATCATGCGGCAGACGCGGGCCCACGACGGCAGTGTGTTTACTCTGTGTATGCTGCAGGGGGGTGCTCTCCTCAGCGGCGGGGGCAAAGACCGTAAGATCATCCGCTGGAGCGCTGACCTTGCACccgagagagagtgtgagATTCCAGAAAAGTTTGGGGCGGTCCGTTGCATTGCGGATGTAGACGGGGAAGAGTTGTTGGTTGGTACCACCCGAAATGCCATCCTGAGGGGCACTTTCTCTGACGGCTTTGTGGCTATAGTacagGGCCATGTGGATGAGATGTGGGGCTTggccacacacccctcccaggATGTCTTCCTCACCTGTGGACATGACAGACAGGTGTGCGTGTGGAACACAGAGGAGCACAAACTGGACTGGTGCACCACGCTAGAGGAGTATGGACTGTGTGCTGATTTCTGTCCCAATGGGGCTGTGGTGTCTGTTGGGCTCAGCACAGGCAGGTGGCTGGTCCTTGACCTGCAGACCAAAGACATAGTCTCAGACTACACCGACGGGAATGAACAGCTGTCCGTAATGAGATACTcaacagATGGTAGCTTCCTGGCAGTGGGTTCCCATGACAACTTCATCTACATCTATAACGTCACAGAGAGTGGACGGCGCTACTCCCGCTACGGAAAGTGTAACGGTCACTCCAGCTTCATCACTCACCTTGATTGGTCCAAAGACGGGAAGTACATTATGTCCAACTCAGGCGATTACGAAATCCTTTACTGGGACATCGCTGGAGGCTGCAAACTGCTGAGGAACCGCTATGAGAGCAAAGACAGAGAATGGGCGTCCTACACCTGCGTACTGGGCTTCCACGTCATGGGTGTGTGGTTGGAGGGTTCAGACGGTACAGACATCAACGCCCTCTGTCGCTCCCACAATGAGAGAATGGTGGCGGTGGCCGACGACTTCTGTAAAGTCCACCTCTTCCAGTACCCCTGCCCTAAACCCAAAGCTCCAAACCACAGCTATGAGGGCCACGGCAGTCACGTGACCAACGTGCGCTTCACCCACTGTGACAGTCACGTGCTCTCCATGGGCGGCAAGGACACCTGTATCCTCCAGTGGAGGGTCAAGAGAGGAGGGACGGGGGACAGCGGTGGAGACCGCCtacactcctcctcttccacctcaaCCAGCTCCCCAGAACCttaagggagagaaggagacatggagagaaagacagagactgagagaatcagagagaggctgatagagagacaaaggggagagaacgtttacagagggagagcgagagggagggagcaacTTAGAAAGAGAGTGGCTTCTGGACCTGTGGCGTAGTGTTTGTGTCTGGCTTTTAAATCGAAGCAGGTTTAGGAATCACATCCCTGATGTCCACAGGATTCTCTGTTCAAACACAATGGAGTTTTGTAATGCAGATATGAGCCACACATGACGTAATGAAAACATTTAATACATCTGGGCACAATTTACTTCTCAGAATGAGTGAAATGCTGTTGCATCTTTGTGAATTTCCTAGATTGATGCAATTGAAAAAGGTCAAACTGTTAACAACTGACTGTTGGGACTGCCATCAATTGTTGAAAACATTCCAAAATATCCTATTTTGTTTACTAAATTGTTTACCATGCCAACTTACCCTATTGATGTTTTATGGTTGTCTTCTCATAAATGTCATATAAAATCATACATATCTTGTGCTGTTGCGATCTATGAATATTAACTTTTTATGTGCTTCTGACAAATTTTGCATTTTGCCACATGTTGACAATCACTCAAGTGCCTTAGAATTGAATAACAAAAATATTTGCTTTACTCATTGTAGTTTAAACTAATCTCCTGAGTATTAGACAAATTTCCGAAATGTTTACCTTCATTGTACACTTTGCTTTTGTATTGGATTTCTTCTATGTTTATTTAAAAGTACTTTTGAATGGGTCGTGGTTTTCTTTGTCTCCAGATATTTCGATCAATAAACTATGACAAACTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896319 lncRNA upstream 5592 27400367 ~ 27401709 (+) True G787013
TU896322 lncRNA upstream 7022 27399783 ~ 27400279 (+) True G787016
TU896321 lncRNA upstream 9670 27396124 ~ 27397631 (+) True LOC110531855
TU896333 lncRNA upstream 22319 27384716 ~ 27384982 (+) True G787027
TU896308 lncRNA upstream 29832 27376152 ~ 27377469 (+) True G787002
TU896413 lncRNA downstream 62615 27501379 ~ 27506375 (+) True G787069
TU896452 lncRNA downstream 139059 27577823 ~ 27578280 (+) True LOC110533009
TU896453 lncRNA downstream 145699 27584463 ~ 27584768 (+) True G787107
TU896464 lncRNA downstream 182213 27620977 ~ 27623770 (+) True G787118
TU897991 lncRNA downstream 265251 27704015 ~ 27704232 (+) True G788583
XM_036987727.1 mRNA upstream 8278 27388891 ~ 27399023 (+) False LOC110531855
XM_021615320.2 mRNA upstream 8278 27388892 ~ 27399023 (+) False LOC110531855
XM_021615319.2 mRNA upstream 8278 27388897 ~ 27399023 (+) False LOC110531855
XM_021615318.2 mRNA upstream 8278 27388898 ~ 27399023 (+) False LOC110531855
XM_036987725.1 mRNA upstream 8278 27389140 ~ 27399023 (+) False LOC110531855
XM_021615325.2 mRNA downstream 278 27439042 ~ 27471435 (+) False LOC110531858
XM_021615326.2 mRNA downstream 285 27439049 ~ 27471435 (+) True LOC110531858
XM_021615328.2 mRNA downstream 41274 27480038 ~ 27487512 (+) False taf6l
XM_021615327.2 mRNA downstream 41275 27480039 ~ 27487512 (+) False taf6l
XM_036987737.1 mRNA downstream 48884 27487648 ~ 27490438 (+) True kcnk7
TU896328 other upstream 27637 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 993769 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1448434 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1664392 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 1860334 25545231 ~ 25546967 (+) True G786091
TU896363 other downstream 47030 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 1901217 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1901683 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2843911 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 2843911 30282675 ~ 30288163 (+) True LOC110531891

Expression Profile