RNA id: XM_021615325.2


Basic Information

Item Value
RNA id XM_021615325.2
length 4755
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC110531858
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 27439042 ~ 27471435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGACACAATAATGTTGGTGTTGGTGATGGTTGGAGCAACTCTGTCTTGCtgagaattgtgtgtgtgtgtgtgtgtaataagtaGCCGGAGTTTTCCGATTCGAAGTTACATTTTCCGGAGATGACGTTTACAAACGAgggggagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatactgagcggaggtgaagaagaggaggatgaagctGGGAGCTGAGGATGGGAGGAAGAGTGGAGTAAGAGACAGGCTAGCTATCAAGGGCTGtgtatgcctgcctgcctgcaagTGTGAATGCGtgagtgagtgtggaagagggagGTCGTTATCGGACTGAAACAAAAGACGCATTTTGGAACCCCGAAACATTGCAACGGAAACTTTAAACTTTTACCCGCCAGAGCTTGGCTACTGTGCCGGGTCCCGGCTTTGTTTCGCGGCGGGTGAGGTCTCTAATAAATGCAAGGATAAAATAGCTCCAGATCGACATTTTTAACGCAGGAGGGGAATCCCTTTGGACAGTGTTTTGTTGGGGGTAACGAGAGAATGGCGGCCAACATGTACCGAGTGGGAGATTACGTGTACTTTGAGAATTCCTCCAGCAACCCTTACCTAATCCGCAGAATAGAAGAGCTCAACAAGatcatgGTTAATCCAATGACGGCCAATGGGAACGTGGAAGCCAAGGTGGTGTGTCTGTTCCGGAGGCGGGACATCTCGGGCAACCTCAACACTCTGGCCGACAGCAACGCGAGAGACTTTGAGGAGGAGTCCAAGCAGCCCACTGTGTCTGAACAGCAGAAACACCAGCTGAAGCACCGAGAGCTTTTCCTCTCTCGGCAGTTTGAGTCTCTACCTGCAACTCACATACGagGGAAATGTAACGTCACCCTCCTCAACGAAACGGACGTCCTCGCCGGGTACCTGGAGAAAGAGGAGTGTTTCTTTTACTCGCTGGTGTTTGACCCGGTTCAGAAGACCCTCCTGGCGGACCAGGGAGAGATCCGCGTAGGCTCCAAGTACCAGGCCGAGATCCCTGACAAGCTTGCCGAAGGTGAAACACACACCCGTATCCAGGAAAAGCTGGAGACCAAGGTCTGGGACCCTGACAACCAGCTCAAAGACCCCCAGATTGACCAGTTCCTGGTGGTGGCTCGtgctGTGGGGACGTTTGCCAGAGCCCTGGACTGCAGTAGCTCCATCCGTCAACCCAGCCTGCATATGAGTGCTGCAGCAGCCTCCAGAGACATCAcactgTTCCATGCCATGGACACCCTGCAGAAGAACGGTTACGACCTAGCCAAGGCCATGTCCACGTTGGTCCCGCAGGGCGGGCCGGTCCTCTGCCGTGACGAGATGGAGGAGTGGAGTGCCTCGGAGGCCATGCTGTTTGAAGAGGCCCTGGAGAAGTACGGCAAGGACTTTAACGACATCCGCCAGGACTTTTTACCATGGAAGTCACTAGCCAGTGTGGTCCAGTTCTACTACATGTGGAAGACTACTGACCGCTACATCCAACAGAAACGACTAAAGGCAGCAGAAGCAGACAGCAAGCTGAAACAGGTGTACATCCCCACCTACACCAAACCCAACCCCAACCAGATCATGGCTCCTGGTAACAAGCCTGGCATGAACGGGGCCGCTGGCTTCCAGAAAGGACTGAGCTGCGAGAGCTGCCACACTGCCCAGTCAGCACAGTGGTACGCATGGGGTCCTCCCAACATGCAGTGCAGACTGTGTGCCTCCTGCTGGATCTACTGGAAGAAGTATGGAGGCCTGAAGACCCCCACACAGCTAGAGGGCGCCGCAAGATCTGTCTCGGAGTCCACTCCGCGCGGTCACATGACCCGCCAGGAGGTGCAAGGCCTGTCCCCGTTCACGACAAGCGGGGGGCGCGCCAAGCTGCTGGCCAAGAACCGGCAGACATTCATCCTGCAGACCACCAAGCTGACGCGTATTGCCCGCCGTGTCTGCACTGACATCCTGCAGCCCCGCCGCGCGGCACGCCGCCCCTACGCCTCCATCAATGCAAACGCCGTCAAGGCCGAGTGTATGATAAGGTTGCCTAAAGCAACCAAGGCCCCTATAAAGAACCGCTCTATCCCTCGACCACCGCTGGCCACTATAGTGAAGGAACTGGCCATCCAGGCTCCACTCAAGCTGAAGGCCCCCAGAGGCGCTCCCACACCCATCAACCGCAACCAGGCCAACCAGCCCCGCGGGGGATCAGGCCTGCTCGGGAAGAGGCCCTTTGACAGTAGCTCACAGGCGGCAGGGCTGCCGTTCCCCACCAATGGGAGGCCGTTCGCATCGGGCATGAGGACCACTTCACAGTCGGTGATCAAGCGTCAGAAAGTGAACCAGGGAGACGCACCCAACCCCGTGGTGTTTGTGGCCACGAAAGACACCAGGGCTCTGAGAAAACACCTGACTCAGTCTGAGATGCGACGTGCAGCCAGAAAACCTCACCTCCCGGTCAGGGTCAAGCTGCCCCTAGGTCCCCGGACCCTGGTTCTGCCCACCCTGCCATCCAGCACCAGCGAGCCCATCGTCCTGGAGGACTAAGGGGGGGGGGTCACCACCCTGCACGTCCACCTGCTAGTGCAGCAGCGCACGCCATACCAGTCCAGTAGTCGTTTTCTGTTGTCATATTTTTTTGTTCTGTTACCTCCCAAAAGCTGACGTGCtgcttaccacacacacacacactttactgaCACCCACATTGagctcacacatacacatgccAACATTACTTCTCTACACACACTTACACCCACATACACGCGCTGGGCTTTGGGCTTTGTAGTATTTTATTCCGGCTCTTTTTGCTTAATTATTTTGCTCCCCTTTTTTAATGGCAAATATTTTTAACTGTGTAATTTAAACTCTGAAATATTTCTCATCCTGAAATAATGGTGTTAAAACACTTTATTTTTTCCTCCGGGTCTTATTTGTGTAAATATTTGCAGCTTTTTGAGAGGGTGACACCAATTTGGTTGGGGATGTGGGAAGGCCATAGAAAGAAATAGAAATACTAGAAGGGACAAAGTCTCTCAAACCACTGCAATTTGACTGAATGTCCATTCTAGTTATTCTATTTCTATTGGGAAGGCTAAATGGGACAGGAGTTTATAGCATGTTTCTTTTGATTATTTTTCCGGGAAAGTCTAGTTAGATGTTAATGAAACCATGTTCCTTCATAGGTCTGGGAGGTTGAGGTGAAGTACTTTGTATGACTCATCATTCAAGCATACTTGTCAAATAATCATATTCTACTTTTGGACACTCATTCTGTTAGACTTTAATTTGCACTGTCACCCTGccccctttccacacacccaaATAAGAACTGATCCCCCCTCTATCTCCACAAGCCTATCAGAAGTTACGTTTGATGGTTTGATAGTGAGGGAAAAAATGCTGTTGACCCCTAGTAGTTTGAGCTCTGTTTTTCTTGTTTGTCATCACAATCCATTTGAGTCTTGCCTTGTCTCCTATCACTTGATTGTCATGCTTGTTACAGCCACGTTTTACCCATCCGGAGAGCGAGACTTTCTGGATCCGTCTCTGTAAAGCCTTTGGGGTGCGTTTTGGTTTTGACCTGCGAGAACGACCTCTCGTAGAACGGTCTTGGATCATCAATACAATGGTAGGAGAGAGTAATGGTTTAGGAAAAGGTGTAAGGTGTAACAGGGTAGAATACATTAATTTCATGTAGGTTTGGAAGATATTCAAAAGTGTGTTCTGGATGTGGATCTGATGGGTTACTGTGGTTTGAGACATACGGAATAGATGCTGTTGTCTTTAAGGCCCTTATTGTGAGAAAGATGGGTTATTTTTAGTGAAGGAGACAGAATTAAGCCATAAACATTCAAGGTGTGTAAAACTCCATTCTAAGATGGCCCCTGTGCATGTTGCCACCTGTACGTATAAAACATGCATTCAGATCCCCCACCCATAGATTAAGTCACAGCATTTATGACAATGGACTGTTTCGCTCTTGCTTTTGAACAGACATGGCAAATTATGTTACGAGCTGGTCGTCAGAATGTCATTACTAAAGCAGCAATATGTATTGACTTGGGTACAGAAGTCATGTTTTTAATGATATGATGGGAGAGGAATCTCCAGTGATGTCTTTACTTGTGGATTGATATggtttgaatctgtgttttaccTTTTTGTGTTTTATGATGAAAGGGTGCGTTAGATTAAATCGATGCTTAATTGGATATTATAATTCCTCATGCTCCCTCAGGCATTGGGAACTGACAGCCAGTACTGGGGTAGAAATGAAGGATTTATATGCAAGTTTGGTCCCAATGTGGGcttttgtaatgtttctaaaacaaatTTTAAGTGTTAAAATGCTTAGTGAAAATACTAATCTGAAGAAGAAAAAACTTGACCTATTGATaatgtcagtttttttttttatatataaaaccTTTTAAAAAAAGCTTGTAATTACTTCATATTTTGGAGAAGGTTAAAATACTGTACATGTGAACATTGCTCTCTGTCATTGAGTGGTTTTGGGATGGGAGACTGGGATGGTTGGCCATCAAACAgttgggagggatggagagggggttaGAATTTTGTATGTTGGAGAGATAATTATGctacaattacattttttttctcaagTGTTTTTTATTCCAATGTGTCTGTATCCTTTTAATGTATCTTgataagaaaataaataaagattTGTTTTCTTTGTGGTCATATACACATTTCTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896319 lncRNA upstream 37333 27400367 ~ 27401709 (+) True G787013
TU896322 lncRNA upstream 38763 27399783 ~ 27400279 (+) True G787016
TU896321 lncRNA upstream 41411 27396124 ~ 27397631 (+) True LOC110531855
TU896333 lncRNA upstream 54060 27384716 ~ 27384982 (+) True G787027
TU896308 lncRNA upstream 61573 27376152 ~ 27377469 (+) True G787002
TU896413 lncRNA downstream 29944 27501379 ~ 27506375 (+) True G787069
TU896452 lncRNA downstream 106388 27577823 ~ 27578280 (+) True LOC110533009
TU896453 lncRNA downstream 113028 27584463 ~ 27584768 (+) True G787107
TU896464 lncRNA downstream 149542 27620977 ~ 27623770 (+) True G787118
TU897991 lncRNA downstream 232580 27704015 ~ 27704232 (+) True G788583
XM_036987730.1 mRNA upstream 278 27407301 ~ 27438764 (+) False LOC110531857
XM_036987731.1 mRNA upstream 278 27407302 ~ 27438764 (+) False LOC110531857
XM_036987729.1 mRNA upstream 278 27407641 ~ 27438764 (+) False LOC110531857
XM_036987732.1 mRNA upstream 278 27407641 ~ 27438764 (+) False LOC110531857
XM_036987735.1 mRNA upstream 278 27407641 ~ 27438764 (+) False LOC110531857
XM_021615328.2 mRNA downstream 8603 27480038 ~ 27487512 (+) False taf6l
XM_021615327.2 mRNA downstream 8604 27480039 ~ 27487512 (+) False taf6l
XM_036987737.1 mRNA downstream 16213 27487648 ~ 27490438 (+) True kcnk7
XM_036987744.1 mRNA downstream 23030 27494465 ~ 27561525 (+) False LOC110531861
XM_036987745.1 mRNA downstream 23030 27494465 ~ 27561525 (+) False LOC110531861
TU896328 other upstream 59378 27379332 ~ 27379664 (+) True G787022
TU895770 other upstream 1025510 26413112 ~ 26413532 (+) True G786496
TU895436 other upstream 1480175 25958084 ~ 25958867 (+) True G786218
TU895142 other upstream 1696133 25712997 ~ 25742909 (+) True G785962
TU895278 other upstream 1892075 25545231 ~ 25546967 (+) True G786091
TU896363 other downstream 14359 27485794 ~ 27487523 (+) True taf6l
TU899899 other downstream 1868546 29339981 ~ 29342203 (+) False rbpjb
TU899896 other downstream 1869012 29340447 ~ 29342203 (+) True rbpjb
TU901372 other downstream 2811240 30282675 ~ 30288163 (+) False LOC110531891
TU901374 other downstream 2811240 30282675 ~ 30288163 (+) True LOC110531891

Expression Profile